Scaffold Ga0209296_1065417

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1065417
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1841
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032536	Metagenome / Metatranscriptome	179	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10654172	F062447	AGAAGG	MKHKIFWEKNSRVKGIVPQEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWNGSNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVREILNKI
Ga0209296_10654173	F032536	GGA	MSKRQSLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYYSLANRHHLIIDDKIVPYVPKEDDFEFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSEVGLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0209296_10654175	F104482	N/A	MTSEEFEKAMKAEGRLISKVCYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0209296_10654176	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNKSNISKIA