Scaffold Ga0209296_1020166

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1020166
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3811
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F068573	Metagenome	124	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10201663	F093530	N/A	MRNAYASHTDFGFLRGVILENPKAMPSNIDMVFERRGNFLIGEWKREDEEISLGQKILLKALADQDKFTVLVIYGYSDDTGTEVDKFYKVTQDKLVILGNGIEGLKDYIDAWYQSSNGVSSL
Ga0209296_10201664	F002037	AGG	MSKIYWIFITVLAALAIWGTEKAIGQTTTILAPDGSVTVCQVGSNGLIICV
Ga0209296_10201666	F011384	GGAG	MYTKLDDQRQAKFVINYVTAHPGCSIKEIVQECVIARTRLKYLESQGYLILPKWTYSNELDKRFKNRKYVSVTVGREYGRWQEQKRY
Ga0209296_10201667	F068573	GGAGG	MLDSKPLTQEEIMKAYSKVFPTRYEPMTLERMIQFVRIIEQLHGVKDVH
Ga0209296_10201668	F003066	AGGA	MKKEPVAWLYEEYDVRSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFLGEPVEEYKGISKYDSKKLTEAHAGL