Scaffold Ga0209296_1019813

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1019813
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3847
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium casensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007747	Metagenome / Metatranscriptome	345	Y
F020510	Metagenome / Metatranscriptome	223	Y
F073238	Metagenome	120	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10198131	F073238	N/A	YWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK
Ga0209296_10198133	F020510	GAGG	MSLADLLSMFSGRIIGTYTREQYANCVREARANRMRWGMGQW
Ga0209296_10198135	F081048	AGGA	MSVKRITWQIEILERAKKSLADGRVVVTRCRLDLALHIAKEMLKRAKVYQKRDAEKKK
Ga0209296_10198137	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVIYDAKTAKALHAFGLKQLKKDEEAVIEYVIVKALKAFAKK