NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1012076

Scaffold Ga0209296_1012076


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1012076 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5138
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F023346Metagenome / Metatranscriptome210Y
F045085Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10120762F001840GGAMKDQDSIFLICECFEHGLLVEKFKDEEEVSLSLFERGLNGRTLCWSERLRWCWQILRHGKPWSDFIILNTENQKQLKDFLNEVQKL
Ga0209296_10120764F045085N/AMNKLYKVIDLTVGLVFGSLFAIGIILVITIFFVVLIPSIFYFTVREVLKQLIKK
Ga0209296_10120765F023346N/AMNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDILNADSTAEVVETLTRVEKIITNERKSQWICDHCGKNTYNDDCEYLFGKNHIGCVLSEDIKNREHSDPDYILDSNLRKFTELEAELRHTKRQLVNLELKLERLRGDYPHEPTN

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