Scaffold Ga0209296_1011358

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1011358
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5331
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025443	Metagenome / Metatranscriptome	201	N
F065409	Metagenome / Metatranscriptome	127	N
F065774	Metagenome / Metatranscriptome	127	N
F092043	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101135810	F025443	GGA	MNNDLRELAPVPKDVAREMQEDALAKFLAQGGSVQELKGRKNPKPVSARGKSNSGMKLRADPTARFPSKSN
Ga0209296_101135811	F065409	AGAAGG	MKVETAIKHLETDADFLGMEFFDFIAFVKENPMAQTAKTIEAYAIFAIESKRAWDRVA
Ga0209296_10113582	F092043	GGAG	MMPWYKKLLLIIIAPFVIGAWCVMNPRRVWEQAKKDFGVEL
Ga0209296_10113587	F065774	AGG	MTLNYKAMGEMITSNETYKREMNMYGMTTDDIRTQYMAIGQMTGLEMVVAGILSDVQELTAYQHAADINSKASKELIRKQLNIAKFVLFEMMDQRETA