NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1009333

Scaffold Ga0209296_1009333


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1009333 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5956
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F011386Metagenome / Metatranscriptome291Y
F021757Metagenome217Y
F025743Metagenome200Y
F048982Metagenome / Metatranscriptome147Y
F080046Metagenome / Metatranscriptome115Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10093331F002515N/AMSTQKSPEELRRLMELRRSNAASAVPSKKVYSRKAKKCQSYLLELK
Ga0209296_100933310F021757AGGTGGMMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFESDNSNFKHEVFREACLK
Ga0209296_100933317F048982AGGAGGMSIELQDVLNVCRQIRGNDRDSGAHYLLGYLWANTSDFEKQRIATLFTNDLLEQEKK
Ga0209296_10093332F025743N/AMTATMETMKFVYADLLTPAQLMEGDLINIENDIVEVLSVVDDATGDNYTILHRNDFGEEEETFCTFEDMFKLYVFIEED
Ga0209296_100933324F080046GGAMTLSLANKIAKDKFFLPPSKFYNHKVVEILSLNDETEIASVTLQKYGISKNAHAVKGNFITLELPYAEFKNLNGWSK
Ga0209296_100933325F087194GGAGMNLEEYKQYVEAQRLSSLAIALDALRKSNAIQELESEKNK
Ga0209296_100933326F011386GAGMIDITITTMQGNTRKVKLMSKQEALDFIELFESTLHANQRVKITCDLLGINGYVQGTK
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