Scaffold Ga0209296_1004956

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1004956
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8610
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F018170	Metagenome / Metatranscriptome	236	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10049561	F018170	GAG	MADDKNTLELINSITEFNDLSEYMKDDQLDKALAIIVKLLMNPDVPSAKAPYLIIELQAMSTKFSMMASVYST
Ga0209296_10049562	F033808	GAGG	MEIFLFSGIAIGFLIGYPLGLFIDNLNKKENKKNGR
Ga0209296_10049564	F071247	GGAG	MGSNNKIPFNPTVIKDGRIVRIRKDGSIKADLGPYKRKTQKAK
Ga0209296_10049568	F004006	AGGAG	MTDDVQGLVTSISLNQVLVAILEEHTKLTIPTSRFLEVSSEEKELVIDYDENNLTFTFSLRVKG