NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1003214

Scaffold Ga0209296_1003214


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1003214 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11186
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F011368Metagenome291Y
F021758Metagenome / Metatranscriptome217Y
F026201Metagenome / Metatranscriptome198Y
F075696Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100321410F026201AGGAGMQNAKQYITEDEDGYNLCINVNEKCGNYTVESIDMFIAKDADEGSGDLAVSYDISTLQNDETAQTMGTLLLRNLHSDDEVTVAMGHFYWDGAFTERLQEIITNAGFASASDITTSEWGMQDEGRASYDAYDLADEIRNIMQTATA
Ga0209296_100321431F000354GGAGMTKVNYDKFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHLMETEFDFEDVGSGEYEAFDAGVRYALTKMNIAFEAAGLDLQICSADLVESMGYMLVRTDDDPESFVKRVLKKPVLMVESWVD
Ga0209296_100321435F011368N/AMNHSLTHKDIAGAHLLPGDHCLVTEHNRLILARVIKCYPASNGVQLQPLNSSAGGRRSRPSQKQIRRECYNVYRIAEVEITMSILRGAV
Ga0209296_10032145F021758AGAAGGMKVIKLDRRYSGHGTWTHRTNGGYWQGEEARAKGLMSFYEMRCYMTQMNGPGCFIHEAWAIKKHGQAVPDWAWDADGNVFFRDSALVNFTLAKDRWQ
Ga0209296_10032149F075696AGGAMQNTKSKLDSLMLQLQTVLEEAELDEHETIQNAFNALACALDEEITA
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Institute for Fundamental Biomedical Research
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