Scaffold Ga0209296_1002880

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002880
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11991
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008677	Metagenome	329	Y
F029327	Metagenome	188	Y
F037029	Metagenome	168	Y
F050111	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100288016	F029327	AGGAG	MGFFKDIEIEIMDWQDQGRSIQDTYIYFKDYVTLEDVVRIFARDCDEATV
Ga0209296_100288017	F050111	GAGG	MNFSFNPNNSKPLYSIRYTMKPDQIFTFVSGLHDIQLDMIDEVVARKEKEGFPEASVVIKHIMEKK
Ga0209296_100288018	F037029	GGA	MKAGSFRHWCSEKWFEHKDELEAYGHPVCYTAKEYFIKYKYWLKREYRHQQKND
Ga0209296_10028805	F008677	AGG	MIVEKDQVYTFKLTNADELVGKIVEITNDSYIVSQPLSAVPTEKGIQLIFTVFTGNPKENATINKTAIAMICQTRDEVCDHYLEATTGIKAVRKPSIIMG