Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1002253 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1002253 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13999
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (91.43%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

13999

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (91.43%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N
F015570	Metagenome	253	Y
F020664	Metagenome	222	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F043820	Metagenome	155	Y
F048999	Metagenome	147	N
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100225310	F079808	GGAG	MKIKDELQAIYEDQADVYYCCYCLETQGEKITCCQENHFVEFKYLFPNDQKQIAQEILNG
Ga0209296_100225312	F024504	AGGAG	MMDRPTVGITAPYRKSDYTYKDMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0209296_100225313	F015570	GAGG	MNEELDRAFDLLEFDVTDQIRNSVYLAEQRKISTGVTDGSIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209296_100225314	F029673	N/A	MVQHLRMAACNENTITGMSNAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTMRVRE
Ga0209296_100225315	F004231	AGGAG	MSVKPSDFKHEICVYLEGIGECLVCFDILSPGDELDADHSDSYEIDFAVFDEQDKHITYDISKKQYNHCENKASDEMRDITTQWHKEWETCFD
Ga0209296_100225316	F014489	AGGAG	MELKQQHISILKRLAHGASSLKRFTDKDGEVGNQGFHYLRYLNYLQNFGLALEINETWHITGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKHGGNRVGASDFLKYPSKFGDNLVLPRVSL
Ga0209296_100225319	F043820	AGGA	MTKNEAHAHLNRLREGHPMPVSLTTQALLITGDIPRISDKPLCFDSNESTDDRGGEIQNQGIEEGFSYSAYLDSQQNQGVKE
Ga0209296_100225322	F020664	N/A	VAKQIINRPKYDDMQGHLFKLTESERHIIKTIGGGSYAEGVRICIMWGAHFYNLGLTTEMDIRHIGLVTVSSTDNYPHE
Ga0209296_100225331	F048999	AGG	MLTITLHQKTDSNGWQTVKTLPIDSIQWGKIDRDWISTLIESGSMVITIGHTMYSIDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1002253

Overview

Ecosystem & Geography

Associated Families

Sequences