NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002200

Scaffold Ga0209296_1002200


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14231
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F007361Metagenome / Metatranscriptome352N
F020338Metagenome / Metatranscriptome224N
F057903Metagenome / Metatranscriptome135N
F088293Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100220013F057903AGGMALGNRLESDISITPPKMKFKNSGNSSVQVEIISDDVEIRIGEMKWVGVAYIRDGKSKVYVRTKAEFKAKFIPVIEQAP
Ga0209296_100220021F007361GGAMSVLFSLENDCIGLHEQGATDPNWQKSIEGYRNRYKYVADCSTYGYLPKAVVHDSIKVYVKKDAESSAKECTERFGYEVHLPSIQMLREYADKWAASNSVMTIGEGELFKVDTLRRIWIHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGGRLLKEVF
Ga0209296_100220023F020338N/ASLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0209296_10022003F088293AGGAGGVSVEQRILDLPAFADYNDRRQLRAIAMDVRKMEDRVKQLEQENDAMRADLLLWNEKEVKP
Ga0209296_10022005F001259AGGAGGVSNDHFREGRNMISDSFAFIYIHAWNGIVRVESLDTAKHVDGNPEWKHVATINPHVILERILRAKGKERNLIIKHLLT
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