Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1001614 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17015 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (90.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006696 | Metagenome | 366 | Y |
F024973 | Metagenome / Metatranscriptome | 203 | Y |
F061661 | Metagenome | 131 | Y |
F071151 | Metagenome | 122 | Y |
F077015 | Metagenome | 117 | N |
F091603 | Metagenome | 107 | Y |
F103126 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100161413 | F071151 | AGGAG | MNTCCDYGKCTNGPDCPVRKQRIKEINDAYANGYNDAQLGDPLDDLADTFKALLTMVTVVLGVWVVCLVIWGK |
Ga0209296_100161418 | F091603 | AGG | MTVTRFANGSDSKRRVLGLSGEWSPREKLLGEAEPSSISIWRQPVYKPPTMATPRPGANDHLQIRSRGI |
Ga0209296_100161428 | F024973 | GAG | MIWTLVLITGINMNSIIIVGYFEYETACQKAAKEWRELGYKVGCVQTQKK |
Ga0209296_100161430 | F077015 | N/A | FSCVVYLMSALSNLAHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQRNRDQIAENRMHIAILEEKTPVNNKIKSLTGKD |
Ga0209296_10016147 | F061661 | AGGAG | MRYREHYTIQPVTRKWADLALALAIGIGLAFFFFMGV |
Ga0209296_10016148 | F103126 | GGAG | MSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWVAAEKLTSARHKQDYDNLAQHCKQLELEIMELKR |
Ga0209296_10016149 | F006696 | GGAG | MKFLKFLKNYYRDLTPSEVIQRELACAHLDRLEAEISIEYAQAVLDMNMTRIEQLNTRLKEYK |
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