NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001614

Scaffold Ga0209296_1001614


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001614 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17015
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F024973Metagenome / Metatranscriptome203Y
F061661Metagenome131Y
F071151Metagenome122Y
F077015Metagenome117N
F091603Metagenome107Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100161413F071151AGGAGMNTCCDYGKCTNGPDCPVRKQRIKEINDAYANGYNDAQLGDPLDDLADTFKALLTMVTVVLGVWVVCLVIWGK
Ga0209296_100161418F091603AGGMTVTRFANGSDSKRRVLGLSGEWSPREKLLGEAEPSSISIWRQPVYKPPTMATPRPGANDHLQIRSRGI
Ga0209296_100161428F024973GAGMIWTLVLITGINMNSIIIVGYFEYETACQKAAKEWRELGYKVGCVQTQKK
Ga0209296_100161430F077015N/AFSCVVYLMSALSNLAHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQRNRDQIAENRMHIAILEEKTPVNNKIKSLTGKD
Ga0209296_10016147F061661AGGAGMRYREHYTIQPVTRKWADLALALAIGIGLAFFFFMGV
Ga0209296_10016148F103126GGAGMSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWVAAEKLTSARHKQDYDNLAQHCKQLELEIMELKR
Ga0209296_10016149F006696GGAGMKFLKFLKNYYRDLTPSEVIQRELACAHLDRLEAEISIEYAQAVLDMNMTRIEQLNTRLKEYK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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