NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000177

Scaffold Ga0209296_1000177


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000177 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56727
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (94.52%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001538Metagenome / Metatranscriptome674Y
F003265Metagenome / Metatranscriptome496Y
F009801Metagenome312Y
F034068Metagenome / Metatranscriptome175Y
F069823Metagenome123Y
F075854Metagenome118Y
F090062Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100017710F001538GGAMIETIKLFPTVQASGYPDKHDLAQAKLEKQQQVNKTLEVAKQKQTELQDIGFEIYCKKVVQERLRMEIFTNRKLDIYV
Ga0209296_100017724F009801AGGAMTECKKEYCEFIGNKAFEDDGGWSYEVWQAAQQAAFKRLAARFGSYGDIDYTGHEIARYVNFIAKQDVPE
Ga0209296_100017725F075854AGGAGMPRSKPPAQLKNRYLRMSDVEWLMFKELGGAEWLRTYVKQKAKFPAAYYATFKQEKK
Ga0209296_100017732F090062GGAGMLTPEQLRRKARQIYNNDMVPEHINRHNQRKWVRAVLQLGDRWLIAKPIERLYAIQGNT
Ga0209296_100017751F034068AGGAGMQIKTIKLNDKDMDYDRLYKAYEGLIDWIGANEVDGQETLGLLIKAAVSIAVTNKLAKEDVLEVVAVTYEIERSMRPRSDEVH
Ga0209296_100017762F069823AGGMNMYTAQIDRHGNIIVCKGDTERNGYRIFFTGSYNDCLGKKVA
Ga0209296_10001779F003265GGAGMRLFFVLLICVVFWASAKSLCIVSDFYGLSWIGEPTLRHTELSKWLTVNGDSCGSQELAGIWNNLSMWAGVADSAELRAKVLYYYARAREREGK
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