Metagenome Family F069823

Basic Information
Family ID	F069823
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	43 residues
Representative Sequence	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA
Number of Associated Samples	85
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	72.36 %
% of genes near scaffold ends (potentially truncated)	43.09 %
% of genes from short scaffolds (< 2000 bps)	76.42 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (43.902 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (38.211 % of family members)
Environment Ontology (ENVO)	Unclassified (74.797 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (79.675 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1JGI25908J49247_100055964 2Ga0066223_10639934 3Ga0068876_102172734 4Ga0049081_102446792 5Ga0049081_102746422 6Ga0073922_10264372 7Ga0075464_109379402 8Ga0102828_100017612 9Ga0114340_10504505 10Ga0114340_10611814 11Ga0114340_11836823 12Ga0114363_11345951 13Ga0114876_11502003 14Ga0114973_1000460910 15Ga0114962_102366961 16Ga0114980_101982953 17Ga0114980_105970442 18Ga0114980_105981961 19Ga0114980_108003451 20Ga0114977_1000087414 21Ga0114977_100518551 22Ga0114975_101027112 23Ga0114975_106155601 24Ga0114975_107805611 25Ga0105104_104697582 26Ga0114979_101632674 27Ga0114979_106626372 28Ga0114979_107566421 29Ga0114969_101187293 30Ga0114959_105457611 31Ga0114974_100280734 32Ga0114974_101308803 33Ga0114972_100067016 34Ga0114964_102285883 35Ga0114964_102423722 36Ga0114986_10288051 37Ga0133913_102180625 38Ga0133913_117394786 39Ga0153697_143013 40Ga0164293_105572382 41Ga0170791_135540532 42Ga0177922_106554572 43Ga0181338_10019116 44Ga0181338_10290003 45Ga0181364_10638491 46Ga0181363_10127344 47Ga0181363_10736101 48Ga0181350_10622913 49Ga0181350_11231301 50Ga0181350_11663942 51Ga0181347_11460532 52Ga0181347_11640641 53Ga0181362_10675882 54Ga0181362_10877441 55Ga0181362_11186603 56Ga0181365_11126823 57Ga0181352_11039022 58Ga0181344_10206774 59Ga0181344_10665884 60Ga0181344_11541392 61Ga0181356_10514412 62Ga0181356_11557123 63Ga0181356_11751561 64Ga0181343_10940581 65Ga0181358_12419321 66Ga0181357_11118702 67Ga0181349_10301271 68Ga0181349_12051191 69Ga0181346_11195171 70Ga0181346_13048272 71Ga0181348_11625012 72Ga0181355_11515283 73Ga0181355_13101201 74Ga0181361_1023461 75Ga0181359_10227303 76Ga0181359_10311723 77Ga0181359_10615523 78Ga0181359_11610153 79Ga0211734_101348501 80Ga0211733_102294552 81Ga0211726_104896863 82Ga0211729_108141432 83Ga0194048_100357171 84Ga0222714_100646274 85Ga0222713_105480231 86Ga0222713_106900351 87Ga0222712_103347112 88Ga0181353_10387852 89Ga0181353_10719332 90Ga0181354_11049364 91Ga0181354_11156851 92Ga0181354_11872282 93Ga0181351_11241171 94Ga0181351_12371701 95Ga0214919_1000143233 96Ga0244775_100215384 97Ga0209850_10151871 98Ga0208306_10047238 99Ga0208974_10055089 100Ga0208975_10769713 101Ga0209033_10415514 102Ga0209499_100098430 103Ga0209297_100073914 104Ga0209085_11372671 105Ga0209596_13199601 106Ga0209296_100017762 107Ga0209296_11296171 108Ga0209088_102528851 109Ga0209829_101753402 110Ga0209246_101018301 111Ga0209401_10004504 112Ga0247723_11239552 113Ga0315291_107260391 114Ga0315909_101091984 115Ga0315294_103839971 116Ga0315274_111445823 117Ga0315905_106761272 118Ga0315903_102906121 119Ga0315273_1007123310 120Ga0315273_116990481 121Ga0335036_0005967_936_1061 122Ga0335060_0587790_1_153 123Ga0335007_0583085_1_120
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1JGI25908J49247_100055964 2Ga0049081_102446792 3Ga0049081_102746422 4Ga0102828_100017612 5Ga0114340_11836823 6Ga0114962_102366961 7Ga0114980_108003451 8Ga0114964_102285883 9Ga0181362_10877441 10Ga0181362_11186603 11Ga0208306_10047238 12Ga0208974_10055089 13Ga0315273_1007123310
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42 1Ga0153697_143013 2Ga0049081_102446792 3Ga0049081_102746422 4Ga0073922_10264372 5Ga0102828_100017612 6Ga0114340_11836823 7Ga0114980_108003451 8Ga0114975_106155601 9Ga0114979_106626372 10Ga0114979_107566421 11Ga0114959_105457611 12Ga0133913_102180625 13Ga0181363_10127344 14Ga0181344_11541392 15Ga0181346_11195171 16Ga0181355_13101201 17Ga0208306_10047238 18Ga0208974_10055089 19Ga0209829_101753402 20Ga0315274_111445823 21Ga0315273_1007123310 22Ga0335036_0005967_936_1061
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.29% β-sheet: 25.71% Coil/Unstructured: 60.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF03237	Terminase_6N	4.07
PF07728	AAA_5	3.25
PF01726	LexA_DNA_bind	2.44
PF13519	VWA_2	1.63
PF06378	DUF1071	1.63
PF07460	NUMOD3	0.81
PF03883	H2O2_YaaD	0.81
PF03592	Terminase_2	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3022	DNA-binding protein YaaA associated with the oxidative stress response	Replication, recombination and repair [L]	0.81
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.81

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.98 %
Unclassified	root	N/A	39.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.44 %
Unclassified	root	N/A	39.02 %
Viruses	superkingdom	All Organisms → Viruses	58.54 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.63 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	43.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Unclassified	root	N/A	39.02 %

Name	Rank	Taxonomy	Distribution
Candidatus Thermoplasmatota	phylum	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	0.81 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	43.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.81 %
Unclassified	root	N/A	39.02 %

Name	Rank	Taxonomy	Distribution
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Thermoplasmata	class	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata	0.81 %
Unclassified	root	N/A	39.02 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	43.90 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43.90 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Unclassified	root	N/A	39.02 %
unclassified Thermoplasmata	no rank	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata	0.81 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	42.28 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Thermoplasmata archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	0.81 %
Unclassified	root	N/A	39.02 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.81 %

Name	Rank	Taxonomy	Distribution
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	0.81 %
Thermoplasmata archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	0.81 %
Unclassified	root	N/A	39.02 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	42.28 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	0.81 %
Thermoplasmata archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	0.81 %
Unclassified	root	N/A	39.02 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.81 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	42.28 %

Name	Rank	Taxonomy	Distribution
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.63 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	0.81 %
Thermoplasmata archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	0.81 %
Unclassified	root	N/A	39.02 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	42.28 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003277\|JGI25908J49247_10005596	All Organisms → Viruses → Predicted Viral	4001	Open in IMG/M
3300004461\|Ga0066223_1063993	All Organisms → cellular organisms → Bacteria	4992	Open in IMG/M
3300005527\|Ga0068876_10217273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1105	Open in IMG/M
3300005581\|Ga0049081_10244679	Not Available	631	Open in IMG/M
3300005581\|Ga0049081_10274642	Not Available	586	Open in IMG/M
3300005955\|Ga0073922_1026437	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	706	Open in IMG/M
3300006805\|Ga0075464_10937940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	541	Open in IMG/M
3300007559\|Ga0102828_1000176	Not Available	11638	Open in IMG/M
3300008107\|Ga0114340_1050450	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2821	Open in IMG/M
3300008107\|Ga0114340_1061181	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1615	Open in IMG/M

Showing 1 to 10 of 123 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.75%
Terrestrial	Environmental → Terrestrial	3.25%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.63%
Freshwater	Environmental → Aquatic → Freshwater	89.43%
Marine	Environmental → Aquatic → Marine	7.32%
Soil	Environmental → Terrestrial → Soil	1.63%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	1.63%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.63%
Lake	Environmental → Aquatic → Freshwater → Lake	43.90%
Lentic	Environmental → Aquatic → Freshwater → Lentic	41.46%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	1.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.44%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.63%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	41.46%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	39.84%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.63%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.63%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.81%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.81%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.63%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.25%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.88%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.06%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.44%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.81%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	38.21%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	26.02%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.81%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.81%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	3.25%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.81%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.06%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005955	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_100055964	3300003277	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA*
Ga0066223_10639934	3300004461	Marine	MYTAQIDRHGNIIVCKGDVERNGYRIFFVGSYNECLNRKVSA*
Ga0068876_102172734	3300005527	Freshwater Lake	KETSTMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA*
Ga0049081_102446792	3300005581	Freshwater Lentic	MYTAQIDRHGNIIVCKGDLERSGYVIFYRGTYNECLNRKLTPA*
Ga0049081_102746422	3300005581	Freshwater Lentic	MYTAQIDRHGNVIVCKGAVERNGYQIFHWGTYNDCL
Ga0073922_10264372	3300005955	Sand	MYTAQIDRHGNIIVCKGDTERNGYRIFFTGTYNACLNLKP*
Ga0075464_109379402	3300006805	Aqueous	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKLVAA*
Ga0102828_100017612	3300007559	Estuarine	MYSAQIDRFGNIIVCKGSVERNGYSIFFTGSYNECLNRKQDHKRPWLA*
Ga0114340_10504505	3300008107	Freshwater, Plankton	MYTAQIDRHGNIIVCKGDTERNGYRIFFTGTYNECLSRKGV*
Ga0114340_10611814	3300008107	Freshwater, Plankton	FGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA*
Ga0114340_11836823	3300008107	Freshwater, Plankton	MYTAQIDRNGNVIVCKGDTERNGYRIFFTGTYNECLTRKVSA*
Ga0114363_11345951	3300008266	Freshwater, Plankton	ETSTMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA*
Ga0114876_11502003	3300008448	Freshwater Lake	MYTAQIDRHGNIIVCKGSVERNGYKIFFTGSYNDCLNRKVTA*
Ga0114973_1000460910	3300009068	Freshwater Lake	MNMYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVAV*
Ga0114962_102366961	3300009151	Freshwater Lake	GNIIVCKGDTERNGYRIFFTGSYNECLSRKLIAA*
Ga0114980_101982953	3300009152	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKLVAA*IF
Ga0114980_105970442	3300009152	Freshwater Lake	MYTAQIDRHGNIIVCKGDTERNGYRIFFTGSYNECLNRKVAA*
Ga0114980_105981961	3300009152	Freshwater Lake	KETSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKLVAA*
Ga0114980_108003451	3300009152	Freshwater Lake	MYTAQTDTHGNCIVCKGSEQRRGYRIAFTGTYNECL
Ga0114977_1000087414	3300009158	Freshwater Lake	MYTAQIDRHGNIIVCKGDTERNGYRIFYTGTYNECLNRKVAA*
Ga0114977_100518551	3300009158	Freshwater Lake	TSMYTAQIDRFGNIIVCKGDRERNGYKIFFTGSYNECLNKKLVAA*
Ga0114975_101027112	3300009164	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKVAA*
Ga0114975_106155601	3300009164	Freshwater Lake	MYTAQIDRHGNIIVCRGDVERSGYRIFFTGTYNECLNRKVIAA*
Ga0114975_107805611	3300009164	Freshwater Lake	MYTAQIDRHGNIIVCKGDVERNGYRIFFVGSYNECLNRKVAA*
Ga0105104_104697582	3300009168	Freshwater Sediment	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYQDCLNKKFVTA*
Ga0114979_101632674	3300009180	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNDCLNKKLVAA*
Ga0114979_106626372	3300009180	Freshwater Lake	MYTAQIDRHGNIIVCKGDTERSGYRIFFTGTYNDCLNVKVAA*
Ga0114979_107566421	3300009180	Freshwater Lake	MYTAQIDRHGNIIVCKGEVERSGYQIFCWGTYNDCLNRKVNP
Ga0114969_101187293	3300009181	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVVAA*
Ga0114959_105457611	3300009182	Freshwater Lake	MYTAQIDRHGNIIVCRGDLERSGYVIFFTGTYTQCINRKFRKDR
Ga0114974_100280734	3300009183	Freshwater Lake	MNMYTAQIDRHGNIIVCKGDTERNGYRIFFTGSYNDCLGKKVA*
Ga0114974_101308803	3300009183	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAV*
Ga0114972_100067016	3300009187	Freshwater Lake	MNMYTAQIDRFGNIIVCKGDRERNGYRTFFTGTYNECLNRKVAV*
Ga0114964_102285883	3300010157	Freshwater Lake	MYTAQIDRHGNIIVCRGDLERSGYVIFFTGTYTQCINRKFRKDRAYA*
Ga0114964_102423722	3300010157	Freshwater Lake	MYTAQIDRHGNIIVCRGDLERSGYVIFFTGTYTQCI
Ga0114986_10288051	3300010374	Deep Subsurface	MNMYTAQIDRHGNIIVCKGDTERNGYRIFFTGTYNECL
Ga0133913_102180625	3300010885	Freshwater Lake	MYTAQIDRHGNIIVCKGDVERNGYSIFFTGTYNECLSRKQDHKRPWLA*
Ga0133913_117394786	3300010885	Freshwater Lake	SMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAV*
Ga0153697_143013	3300011334	Freshwater	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA*
Ga0164293_105572382	3300013004	Freshwater	RFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA*
Ga0170791_135540532	3300013295	Freshwater	MNMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA*
Ga0177922_106554572	3300013372	Freshwater	MYTAQVDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKLVAA*
Ga0181338_10019116	3300015050	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERSGYRIFFTGSYNECLNRKVVAA*
Ga0181338_10290003	3300015050	Freshwater Lake	MYTAQVDRFGNIIVCKGSVERNGYKIFFTGSYNDCLNRKVTA*
Ga0181364_10638491	3300017701	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNKKVAA
Ga0181363_10127344	3300017707	Freshwater Lake	MYTAQIDRHGNIIVCKGSVERSGYQVFHWGTYNECLNRKANPAI
Ga0181363_10736101	3300017707	Freshwater Lake	WRKSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNKKFVTA
Ga0181350_10622913	3300017716	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYKIFFTGSYNDCLNKKVAA
Ga0181350_11231301	3300017716	Freshwater Lake	KKKSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYQDCLNKKFVTA
Ga0181350_11663942	3300017716	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYKIFFTGSYNDCLNRKVTA
Ga0181347_11460532	3300017722	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERSGYRIFFTASYNECLNRKLVAA
Ga0181347_11640641	3300017722	Freshwater Lake	MYTAQIDRFGNIIVCKGSVERNGYKIFFTGSYNDCLNRKVT
Ga0181362_10675882	3300017723	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNDCLNRKVTA
Ga0181362_10877441	3300017723	Freshwater Lake	MYTAQIDRHGNIIVCKGEVERSGYQIFCWGTYNDCLNKKVNRP
Ga0181362_11186603	3300017723	Freshwater Lake	GWRLQNLKETSTMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNDCLNKKVAA
Ga0181365_11126823	3300017736	Freshwater Lake	MYTAQVDRFGNIIVCKGDRERNGYRIFFTGSYNDCLN
Ga0181352_11039022	3300017747	Freshwater Lake	YTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA
Ga0181344_10206774	3300017754	Freshwater Lake	AQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNKKLVAA
Ga0181344_10665884	3300017754	Freshwater Lake	AQIDRNGNVIVCKGDTERNGYRIFFTGTYNECLSRKVSA
Ga0181344_11541392	3300017754	Freshwater Lake	MYTAQIDRHGNIIVCKGDTERNGYRIFFTGTYNECLSHKGARA
Ga0181356_10514412	3300017761	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYKIFFTGSYNDCLNRKVAA
Ga0181356_11557123	3300017761	Freshwater Lake	MYTAQVDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKLVAA
Ga0181356_11751561	3300017761	Freshwater Lake	TSTMYTAQVDRFGNIIVCKGDRERNGYKIFFTGSYNDCLNKKVAA
Ga0181343_10940581	3300017766	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKLI
Ga0181358_12419321	3300017774	Freshwater Lake	ALSVLTKETSTMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA
Ga0181357_11118702	3300017777	Freshwater Lake	MYTAQVDRFGNIIVCKGDRERNGYKIFFTGSYNECLNRKLVAA
Ga0181349_10301271	3300017778	Freshwater Lake	YTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA
Ga0181349_12051191	3300017778	Freshwater Lake	TMYTAQIDRHGNIIVCKGDLERSGYVIFYRGTYNECLNRKVAA
Ga0181346_11195171	3300017780	Freshwater Lake	MYTAQIDRCGNIIVCKGSVERNGYKIFFTGSYNDCLNRKVTA
Ga0181346_13048272	3300017780	Freshwater Lake	MYTAQIDRHGNIIVCKGDRERNGYKIFFTGSYNDCL
Ga0181348_11625012	3300017784	Freshwater Lake	FGNIIVCKGDRERSGYRIFFTGSYNECLNRKLVAA
Ga0181355_11515283	3300017785	Freshwater Lake	AQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA
Ga0181355_13101201	3300017785	Freshwater Lake	SMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYQDCLNKKFVTA
Ga0181361_1023461	3300019783	Freshwater Lake	SMYTAQIDRFGNIIVCKGDRERSGYRIFFTGSYNECLNRKVVAA
Ga0181359_10227303	3300019784	Freshwater Lake	MYTAQIDRHGNIIVCKGDLERSGYVIFYRGTYNECLNRKLTPA
Ga0181359_10311723	3300019784	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA
Ga0181359_10615523	3300019784	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERSGYRIFFTGSYNECLNRKLVAA
Ga0181359_11610153	3300019784	Freshwater Lake	MYTAQIDRFGNIIVCKGSVERNGYKIFFTGSYNDCLNRKV
Ga0211734_101348501	3300020159	Freshwater	ETSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVVAA
Ga0211733_102294552	3300020160	Freshwater	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVVAA
Ga0211726_104896863	3300020161	Freshwater	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVVAA
Ga0211729_108141432	3300020172	Freshwater	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNKKLVAA
Ga0194048_100357171	3300021519	Anoxic Zone Freshwater	KETSTMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNDCLNRKVAA
Ga0222714_100646274	3300021961	Estuarine Water	KETSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA
Ga0222713_105480231	3300021962	Estuarine Water	WCLQNLKETSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNRKFATA
Ga0222713_106900351	3300021962	Estuarine Water	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLN
Ga0222712_103347112	3300021963	Estuarine Water	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNKKLVAA
Ga0181353_10387852	3300022179	Freshwater Lake	MYTAQIDRHGNIIVCKGDVERNGYRIFFTGTYNECLNRKVAA
Ga0181353_10719332	3300022179	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVAV
Ga0181354_11049364	3300022190	Freshwater Lake	VTMYTAQIDRHGNIIVCKGDLERSGYVIFYRGTYNECLNRKVAA
Ga0181354_11156851	3300022190	Freshwater Lake	SMYTAQIDRFGNIIVCKGDRERNGYKIFFTGSYNDCLNKKVAA
Ga0181354_11872282	3300022190	Freshwater Lake	MYTAQIDRFGNIIVCKGSVERNGYKIFFTGSYNDCLNRKVTA
Ga0181351_11241171	3300022407	Freshwater Lake	MYTAQVDRFGNIIVCKGSVERNGYSIFFTGSYNECLSRKQ
Ga0181351_12371701	3300022407	Freshwater Lake	YTAQIDRFGNIIVCKGDRERNGYRIFFTGSYQDCLNKKFVTA
Ga0214919_1000143233	3300023184	Freshwater	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVIAA
Ga0244775_100215384	3300024346	Estuarine	MYSAQIDRFGNIIVCKGSVERNGYSIFFTGSYNECLNRKQDHKRPWLA
Ga0209850_10151871	3300026931	Sand	MYTAQIDRHGNIIVCKGDTERNGYRIFFTGTYNACLNLKP
Ga0208306_10047238	3300027214	Estuarine	MYTAQIDAHGNVIVCRGDEQRRGYRIAYSGTYNECLTWKVTRA
Ga0208974_10055089	3300027608	Freshwater Lentic	MYTAQINAFGNIIVCKGNVVRNSYRIIHTGSYQDCLNVKSQKMGAR
Ga0208975_10769713	3300027659	Freshwater Lentic	TSMYTAQIDRFGNIIVCKGDRERSGYRIFFTGSYNECLNRKVVAA
Ga0209033_10415514	3300027697	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYKDCLNKKFVTA
Ga0209499_100098430	3300027712	Freshwater Lake	MYTAQIDRHGNIIVCRGDLERSGYVIFFTGTYTQCINRKFRKDRAYA
Ga0209297_100073914	3300027733	Freshwater Lake	MYTAQIDRHGNIIVCKGDTERNGYRIFYTGTYNECLNRKVAA
Ga0209085_11372671	3300027741	Freshwater Lake	MTYTAQIDRHGNIIVCKGEVERSGYQIFCWGTYNDCLNRK
Ga0209596_13199601	3300027754	Freshwater Lake	YTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVAV
Ga0209296_100017762	3300027759	Freshwater Lake	MNMYTAQIDRHGNIIVCKGDTERNGYRIFFTGSYNDCLGKKVA
Ga0209296_11296171	3300027759	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAV
Ga0209088_102528851	3300027763	Freshwater Lake	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNDCLNKKLVAA
Ga0209829_101753402	3300027777	Freshwater Lake	MYTAQIDRHGNIIVCKGDTERNGYRIFFTGSYNECLSRKLIAA
Ga0209246_101018301	3300027785	Freshwater Lake	MYTAQIDRHGNIIVCKGDLERSGYVIFYRGTYNEC
Ga0209401_10004504	3300027971	Freshwater Lake	MNMYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVAV
Ga0247723_11239552	3300028025	Deep Subsurface Sediment	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYQDCLNRKFATA
Ga0315291_107260391	3300031707	Sediment	LVLTKETSMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA
Ga0315909_101091984	3300031857	Freshwater	MYTAQIDRNGNVIVCKGDTERNGYRIFFTGTYNECLTRKVSA
Ga0315294_103839971	3300031952	Sediment	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAA
Ga0315274_111445823	3300031999	Sediment	MYTAQIDRFGNIIVCKGSVERNGYRIFFTGSYNECLNKKLVAA
Ga0315905_106761272	3300032092	Freshwater	MYTAQIDRHGNIIVCKGDTERNGYTIFFTGSYNDCLSRKQDHKRPWLA
Ga0315903_102906121	3300032116	Freshwater	MYTAQTDTHGNCIVCKGSEQRRGYRIAFTGTYNEC
Ga0315273_1007123310	3300032516	Sediment	MYTAQINRHGNIIVCRGDEERRTYQIVFAGSYAECLAWKFENGG
Ga0315273_116990481	3300032516	Sediment	MYTAQINRHGNIIVCRGDEERRTYQIVFVGSYAECLAWTFENGG
Ga0335036_0005967_936_1061	3300034106	Freshwater	MYTAQIDRHGNIIVCKGDVERNGYRIFFTGTYNECLGKKLG
Ga0335060_0587790_1_153	3300034122	Freshwater	VLTKETSTMYTAQIDRFGNIIVCKGDRERNGYRIFFTGSYNECLNRKVAV
Ga0335007_0583085_1_120	3300034283	Freshwater	AQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069823

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences