Scaffold Ga0209296_1000034

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000034
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122200
• Total Scaffold Genes: 198
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 153 (77.27%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025748	Metagenome / Metatranscriptome	200	Y
F036235	Metagenome / Metatranscriptome	170	N
F040105	Metagenome / Metatranscriptome	162	N
F045097	Metagenome / Metatranscriptome	153	Y
F059006	Metagenome / Metatranscriptome	134	Y
F059975	Metagenome / Metatranscriptome	133	N
F068832	Metagenome / Metatranscriptome	124	Y
F070111	Metagenome / Metatranscriptome	123	N
F076103	Metagenome / Metatranscriptome	118	Y
F081347	Metagenome / Metatranscriptome	114	N
F093292	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_1000034106	F040105	N/A	MAQRLPPKKFKQIDEALDWACAAETTDELRERVRAISLGNSILMRFVAWGVGYEQGPINLPDGPTPYKDEGLPANMADTTITQEFRRILTLLPEGSASKVPQFRREEIWMQTCQGLQIKEAKLLDHIKDQTLLEAYPRLAEVLESFLIGWKAPEVKKKKSPKKSLATL
Ga0209296_1000034109	F059975	AGGA	MLTLRDINTATNSKDGNIFSDLHKDVYGFRPRDVTFSSIEEFDAEYERLVGKLSVQIDEEKIRQDRNFAEFVCRVDGIMGLVKNCFDNAAAVAIICEAEGIDDEEMRFYGWESLEYRLDLKFGSIKKWLEK
Ga0209296_1000034124	F025748	AGGA	MEVFALMGEWDCEGSAILGVYASEEEARNAHGVYTRDRHRFIDRYYIVRQVLGAHVDDIDYERMYC
Ga0209296_1000034148	F068832	AGGA	MTEVVKKNMFLETMKWFGTACVIVAATCRAFEFHTVDLILSIIGAAIWGYAAYEMKDKPLIVVNGFITSILIVGVFV
Ga0209296_1000034154	F070111	AGAAGG	MHKVEVTLTTDQFDTMVVEELIRTRQTFLNDLGANNHVFVWGDQEADDIEIQKHIDSLDTLINWFATPEQLEECGLSRISDIFPGIDLK
Ga0209296_1000034156	F045097	AGGA	MIFNKIKDLKEKGKMIEAIPYVAVFGIAALAVYGITKMVQSLDGMDIPLDWGQDPYLTELSKKYHED
Ga0209296_1000034163	F059006	GGGGG	MFDDDERTNIMLIRDVVKSKFRELLSYLPVDTYPYFKDSILTGGCFASLFQGGIVNDWDVYLKDVDTADRFESFIMSDTPTLNEVKDATPGYMAEVKVQGKLVTANAITFKNKLQVITRTCKAHRETFDFIHCMPYFDMATQQLFISRAQYDSIKQKKLVKNPAHNQELSSRRIDKFLDRGWYIGA
Ga0209296_1000034168	F076103	GGAGG	MRCKINSDNWEDVGKVYFVHALNNRANSTAVTLVLEDDGGVIHKRVVASHQIEWVDDGNL
Ga0209296_1000034185	F093292	AGGA	MPRKKIGAGKNGSPGVAEQLVAQDVATYYEYTAPDATVVLLNRYEWTRGLGITDKNVKKAQAARHREVAKGFATVEQA
Ga0209296_100003434	F036235	AGGA	MATKAVLKLTQVHGVVKVRGTGSATIALATDLKKSSETQSSPKANIRTLHWALAVATTATVTRNSVVLYYLSGSGKMEFMGWSDNEENGSDIVVDFSSGTGSVVLELAKISGYGSQQHQNQGDLG
Ga0209296_100003463	F081347	AGG	MSNIRCVKLLSGDEIIADIDETIDGLIILKKPMQIMMIPNQNNQFGIGLAPFCPYAKDDMVPLRSGAVITVFEPETGMLNEYNTRYGSGLVVPESKIII