NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209379_10158433

Scaffold Ga0209379_10158433


Overview

Basic Information
Taxon OID3300027758 Open in IMG/M
Scaffold IDGa0209379_10158433 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005817Metagenome / Metatranscriptome389N
F082713Metagenome / Metatranscriptome113N
F086834Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209379_101584331F086834N/AMVMCEWTLADVKNRASNKAFAKQTILKLDIESYKQELKNGTYG
Ga0209379_101584332F005817N/AMRSNLLSRLKPEFKKGLEDNKVRYPSTTNDIEFLLTQLFYYDDLTVRQVLNIFVFSDMEYLDRKNFDWRYGEDAFEIENNVA
Ga0209379_101584333F082713GAGMKIKGLTEQDCAFVYYVLRDWSQNHPNYDEQDVDKVYQIAKKFKNY

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