Scaffold Ga0209444_10056425

Overview

Basic Information

• Taxon OID: 3300027756
• Scaffold ID: Ga0209444_10056425
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1747
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F053253	Metagenome	141	Y
F084156	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209444_100564255	F053253	AGG	MLERVIMDFDLDTPIEKILTDMLDKVEGHVGDCDCVNCNSLEVLAYMIKVEE
Ga0209444_100564256	F084156	GAG	MLCPMVYENRNTIMVTDLCWYDTEQGDNCQWECSDIPGSFYCKDCDGLRVWNRFAQAYSFYVREGHYGF
Ga0209444_100564257	F022399	N/A	YRSIYEKNGLEVFVNPEDYWADYKVNLNNHHGKTFKGETAWMDVTRFVHDQAMEFWDFNTDTINRQWQQDIMAELEKRFGNE