Scaffold Ga0209596_1052506

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1052506
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2122
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans pelophilum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F006135	Metagenome / Metatranscriptome	380	N
F088293	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10525062	F088293	AGGAGG	VSVEERILDLPAFADYNDRRQLRAIALDVRKLEDRVKQLEEENDAMRADLLLWREDKWRE
Ga0209596_10525064	F001259	AGGAG	MRDCAFIYVNKSNGLVRVESLDTAKHIDGNPEWNHVATINPHVVLEQILRASIKDRNKIIKHLLT
Ga0209596_10525065	F006135	N/A	MSVRIKIENQTEVPVLVALFEQPKCNDHPSRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWV