Scaffold Ga0209596_1018932

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1018932
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4186
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F068742	Metagenome / Metatranscriptome	124	N
F078382	Metagenome / Metatranscriptome	116	N
F094923	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10189321	F078382	N/A	KAFAMTLRSAMRQTLDLLVVMFAVLLSRTLWVTIGGLYVVWIVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDQLNPKDK
Ga0209596_101893211	F068742	GAG	MSQNISLSIDLKLIDQKKLKRMTRQNGQEAAFLDLIMIPTPESPYGEYMIKQRSTKEEVEAKVQTP
Ga0209596_10189328	F035216	N/A	MIITYILISSIIATGAFVVGLGQRRENRRLGKMVCEAHIPHRLEQPVSEIAKIKMELELVTLQLESERLESDRLRSIIRETIR
Ga0209596_10189329	F094923	GAG	MIDHDPDLVARANRTMAAIRTMIRIVLTSAILGLLWLLWRLCA