Scaffold Ga0209596_1016299

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1016299
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4617
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046246	Metagenome	151	N
F083896	Metagenome / Metatranscriptome	112	N
F098560	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10162993	F098560	N/A	MKIEMKRPNKEMADNVETMLNDFAKISTIARTLKTQMVTVYRYISYLQYTKVMVSDAELKMIINHRKARKASAAAPAQSTPTPGVTHAATPVLGA
Ga0209596_10162996	F046246	AGGA	MNFSEHAFDACCREAKAIGRRLNKTEWLEAMQEAYDSYPHEGLLATDTTKVKATRVKAVDAEWLESLEQNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAQVSDRPIQFNGAGATSFPTPSAQTSSEPKGWREWVRENSTDPSNADRPWNALEAVAQKYILTQLQK
Ga0209596_10162998	F083896	N/A	MQNVHQIELGEWLRDQGLRQVLEHTPDSWVEAFEEKAGRFLRTQGSFTAEEVVSHVGPPPNHVNAIGAVCRAYARRNDLVGSYEKATNPAAHARVVVRWRDAHAR