Scaffold Ga0209596_1008980

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1008980
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6836
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F011484	Metagenome	290	Y
F083706	Metagenome / Metatranscriptome	112	Y
F095135	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10089801	F095135	AGGAG	MAQIKKPTPKKTPVKKKVLVMPDKISPSKMTPAQKARYLKNPERYDG
Ga0209596_100898010	F083706	GAGG	MQYITPRGWLVAGILIGLSIWGLWEISAHLLWTGNGYEWCKDLLTCEGEGK
Ga0209596_100898012	F011484	GAGG	MSELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQIRRLLNLPQIMRESVA
Ga0209596_100898022	F000821	GGAGG	MNKEYLQAKADLCLDQAKIDLEQEEIARAIANLKRANSALAQLFGFDEDESE