Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1007418 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7758 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000671 | Metagenome / Metatranscriptome | 945 | Y |
F008814 | Metagenome / Metatranscriptome | 327 | Y |
F014140 | Metagenome / Metatranscriptome | 265 | Y |
F066776 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100741810 | F000671 | GAGG | MIDKVLCYSCSKSKNQLNVKKSSLISINLLLCETCISSKFEPRWVVILAGRQYGAELVKDVILKKRYLGKEISASELLV |
Ga0209596_100741813 | F066776 | GGAG | VLNLTLKGVEVFIDRLQATKEEAFWNNYDLVIWKKDNSGYSDIKGIYRNDAWGKAEKISVNSEGIWKLPNKYVKHFK |
Ga0209596_100741815 | F014140 | N/A | MNKYRIKLDVEVEVEAFNSEDASEYIHDIFNIDDEIKKVNIVKITSK |
Ga0209596_10074184 | F008814 | N/A | MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSVNAGETAIWVIQTFMNKFNNAAEELKGD |
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