Scaffold Ga0209596_1007418

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1007418
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7758
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100741810	F000671	GAGG	MIDKVLCYSCSKSKNQLNVKKSSLISINLLLCETCISSKFEPRWVVILAGRQYGAELVKDVILKKRYLGKEISASELLV
Ga0209596_100741813	F066776	GGAG	VLNLTLKGVEVFIDRLQATKEEAFWNNYDLVIWKKDNSGYSDIKGIYRNDAWGKAEKISVNSEGIWKLPNKYVKHFK
Ga0209596_100741815	F014140	N/A	MNKYRIKLDVEVEVEAFNSEDASEYIHDIFNIDDEIKKVNIVKITSK
Ga0209596_10074184	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSVNAGETAIWVIQTFMNKFNNAAEELKGD