Scaffold Ga0209596_1006293

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1006293
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8607
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014140	Metagenome / Metatranscriptome	265	Y
F073544	Metagenome / Metatranscriptome	120	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100629311	F073544	AGG	VREYYEIIKIVFIHAERVYGSIESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHVEESN
Ga0209596_100629312	F000473	AGG	MEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKKIREIKKPDISLQMDIAKYPEFLAIRLYEDNFLKYQGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN
Ga0209596_100629314	F012975	AGGA	MLNLTLKGVEVFIQRSKTKSQESYWDNYDLLIWKETPGGFTNIKGMFRKDQWGVTERIAVNEQGIWKLPNKYVKHFK
Ga0209596_100629316	F014140	N/A	MNTYKVKMDVELEVTAFNETDARDYVGDIFNIDDEIKKVTIVKITEKNK
Ga0209596_10062939	F077310	N/A	MIIDANSVIIVIIASILSGMGTALVSGIKESKREKIRQSEREQDLLKMDLKDLEIKLYKLEKDLAEWRDKYYEALQELIEVKAELEDTLIKLTHIAMHE