Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1005929 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1005929 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8933
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (87.10%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

8933

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (87.10%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F017829	Metagenome / Metatranscriptome	238	Y
F019325	Metagenome / Metatranscriptome	230	Y
F020168	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100592912	F007263	GGCGG	MIDKDYLDETDFYLIKDEQHFCCDESQFVHVCKEHGEQMGCYYCAFDYTQNCEEQH
Ga0209596_100592914	F004840	AGAAGG	MYKITCAYDSEPIHYIREYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTRIFYREGRKVLTV
Ga0209596_100592915	F013527	AGG	MEHYEFNTFITVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESAEV
Ga0209596_100592918	F020168	N/A	MTDLFGSVIAIILITFLCSPIALAVYMWRGSKIDNDNDGKDDLPYRWNK
Ga0209596_10059292	F019325	AGGAG	MTQLNETLLSTIVHEYHNGGVKSSHGLSAYDRKAMVKYLISSPACYCINCVCEVTHTA
Ga0209596_100592924	F017829	AGGA	MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFSKNKISNSI
Ga0209596_100592927	F003422	N/A	MMITYSKYTWVCTGDCDALIEYTFKDGFGWPNGVMQLTCPCNSTCILLSVDDATIAPTTTEEGQMETTMNNLPLSDAEKYNPDLLVTYKVIRGYSDAEYTTDKVRNIEYELHNGRTNSKLVQVLHSKIDSVKDIITESYADSNDQETLQAIAEALDIQLTREVEWSATIEVSGTLTIDLLESTVDDVEQEVYDNLYVDSQNGQIEIVDQEVTNVREN
Ga0209596_100592929	F001043	AGGAG	VSDYKDGFQDGYKFAREELMEKLSEIDIADIDSWILDRLSEMIEGGNL
Ga0209596_100592931	F001125	GGCGG	MGDRTNFGFRDSKENIVFLYGHWAGYRMLENLADAVSAAEPRWSDEAYATRIAISHLIKDEWASETGWGIYVNQLGDNEHKVPIIDWKNKTFTLMEEDLETVVFSTSLNAFVSKYCSQPSMV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1005929

Overview

Ecosystem & Geography

Associated Families

Sequences