Scaffold Ga0209596_1004285

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004285
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10932
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003643	Metagenome / Metatranscriptome	475	N
F003965	Metagenome / Metatranscriptome	459	Y
F004431	Metagenome / Metatranscriptome	438	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100428520	F003643	AGGAGG	MKKDLNKNGMVEMQEKILAALASYGRHFLGIAIGLYSAGVTDPGDLAKGAIAAFVPVILKALNPNEASFGFTKKP
Ga0209596_10042853	F085708	GGA	MNRLITTLVQIALIVPALIMGRMVWREIVADYMEWDKSH
Ga0209596_10042855	F004431	AGAAG	MTITYSLWDGSQLLGAGLTANSADEMNKVVKDLQKVSSNVVAHMRKVTQN
Ga0209596_10042856	F003965	AGGTGG	MTTITMCREHNPMKSAISEVSDTQYTFCQDCEQNVERWYDDTDPERLPMWTEWRVR