NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209596_1003720

Scaffold Ga0209596_1003720


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003720 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11872
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035216Metagenome172Y
F050981Metagenome / Metatranscriptome144N
F068742Metagenome / Metatranscriptome124N
F094923Metagenome / Metatranscriptome105Y
F100656Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100372015F035216N/AMIITYIIVSSIICTGAFAIGRAQRRENRRLGKMVCQAHIPHRLETPVSETAKVRMELELALLQLESERLESERLRSIIRSTMR
Ga0209596_100372016F094923GGAGMSDHDDLVARANKTMRAIRTMIRIVLTSAILGLLWLLWRLCA
Ga0209596_100372017F068742N/AMSYQYFLQNRNQNKKQKDKQMSQNISISIDLKLIDQTKLKRMTRQSGADAAFLDLIMIPTPNSPYGEWMIKQRSTKEEVEAKVQTPILGNAKTAVKWEGQ
Ga0209596_10037208F100656N/AMKTLKNSLLLLSLVTLTACEHNRPKPSPAVVSVAQAKASTASASVAVRSAIDDSKGTIIDIQKIRTAQDRVDAKSVLILKWLEFQR
Ga0209596_10037209F050981GGAGMRWLAIICLSASSVCAQITDDELSKISKEEIVLTVKHLQALTAEAKAAADRAIASEARMQAKLVDATNALMDSQNQLLKVDQDIRNLQAQTEEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCIVCLRLTSILPPPYGFLLPVAAIPAGYWLARLLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.