Scaffold Ga0209596_1003081

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003081
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13328
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F009685	Metagenome / Metatranscriptome	314	Y
F026561	Metagenome / Metatranscriptome	197	Y
F066789	Metagenome / Metatranscriptome	126	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100308119	F026561	N/A	MSNFQKDDGTGMTPPPAAGAASGAVTSREATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
Ga0209596_100308123	F007921	AGGA	MIDLLVNRIFRWDSLRNAIFDEVHMYDEVDKRIKEYKDEEPTNLTWSEGDTWYGWTYSKSKNRYYFDDIGNESLMGLWEDQWARESDETHHNNNKLNIDRN
Ga0209596_100308127	F066789	GAGG	MSDALCTKYGCDYQLDLDGQITCFNCGAMDDDMLPRRTYNDNDKFETQVDFE
Ga0209596_100308134	F009685	AGGA	MKMSDNYLNSVLAEAQKLLWGGSETENIAAHNLISNLIRDRVEQVYN
Ga0209596_10030816	F077310	AGG	MSIDANSVIIVIAASILSGIGTALVNGIKESKREKIRQSEREQDLLKMDLKDLEIKLYKLEKDLAEWRDKYYEALQELIEVKAELEDTLIKLTHIAMH