Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1002611 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1002611 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14778
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14778

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F010530	Metagenome / Metatranscriptome	302	Y
F061855	Metagenome	131	N
F068840	Metagenome	124	N
F077300	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100261111	F061855	N/A	MATYTSATKQLIGNYACVSTLEPTEIGLGESITVTGLGATFNLTAKVLALPQYAFTGVDAETGAFLYNENVPRPNQIIYAATGADVEYVITYAGTITYTQVCTWVSATDVEDWLGIGTATTADATFLTLCAAAASAFCHLRRQECGYHDSLTVLPSTAVGLGTRAYGGFLYRQRGSVTDFASFDGMVSGGSNGLSPMIKQLLGVNRAQVA
Ga0209596_100261115	F077300	N/A	MNNPDESYNRLHDHMSAIARERDWLLREVERLTDELALAHEALRRQMQNATDGFQVP
Ga0209596_100261118	F000722	N/A	MTDTPYPDSGISQETRRAMYPDIYSDKLGKVFNNLIDEIVRPNHVASKAPDHSILLDELELLHEAHITVGGQQNRFNAAVIRSAINVIRAL
Ga0209596_10026112	F010530	GGA	MINYSTILCTNYATQGWVISGNEYSGITWLDTTPKPTEAELDAQWPAVDYQTQYNAVETTRRTQYEAQSDGLFFEWQRGTNTQAAWEAAVQAVKDANPYPPNPAG
Ga0209596_100261120	F008130	N/A	MVETPTIGDAMADAKTYVYEVYTTHLDSSQMVLVQIFRDPDDGQVLHAQIAFKDAIGDSWQTPYQLEKK
Ga0209596_10026117	F068840	GAG	MQLRLKATFNDGTVNEVVTTLATVVAWERKYKRKASEMASGIGVEDLAYLCYEATRASGTTVPGSLDQFIALLVNIDVLETQDPKAVTAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1002611

Overview

Ecosystem & Geography

Associated Families

Sequences