NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1002609

Scaffold Ga0209596_1002609


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1002609 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14785
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005702Metagenome392Y
F005846Metagenome388Y
F006138Metagenome / Metatranscriptome380Y
F009142Metagenome322Y
F011284Metagenome292N
F012433Metagenome / Metatranscriptome280N
F023059Metagenome211Y
F025225Metagenome202Y
F026543Metagenome197N
F027777Metagenome / Metatranscriptome193N
F045612Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100260914F023059AGGAMWEAVLASLAGLIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDAEVDSWIHRN
Ga0209596_100260916F011284N/AMTSEQGVEKTEEKVFTKKHDLHLTTLQMAAVESMERKYKKGVVENSGTKLWEMPTARLVEESIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPQL
Ga0209596_10026092F009142N/AMNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTVAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSETSDGLRSLNFFQTQNSMYVAVI
Ga0209596_100260923F005846N/AMTSFPLPARPQASAVPASHIEFKKETAIEGKLNGWRGWFDQETKQGYNRHGKFALNHNLMAERILGAGIKPRFVDCEIMGQRTKTGKGTIVVMDAFEPANPKPYAERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINAIWEEMNYQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWKKQRIRW
Ga0209596_100260924F005702GGAVIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKKPKEPELLLPTKNWVGRN
Ga0209596_100260926F027777AGGAMSEEMPTFWHQEPDKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQHKQ
Ga0209596_10026094F045612GAGMTHQYTYEDFMSSLKWLEAEGYIEKFYDNNGDLCVRVCEGAEDCEI
Ga0209596_10026095F012433GAGGMSADQVADLRERLARIEERQTNIISILERHTSELAQWSSKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKMRVFSR
Ga0209596_10026096F006138GAGGMAAVTIGTAGLSFGLVSEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0209596_10026097F026543N/AMTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEVGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVAVRVVQTKGGQTLLISENATSEQRRAILKHL
Ga0209596_10026099F025225GAGMSIELLNHDKFVLRLQQYQDASRKNMARVINDKLGDVAVTAIGTTYRTNTAKIASEIQRVEGQIVTRKVFKPFGLTKSGKVKKRKIGEYAFGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKEGVGGLGMGGGKPGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRAKLTRGDYSEEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEKVMADMAVYLARKNKESSDKLKL

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