Scaffold Ga0209596_1002609

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002609
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14785
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F012433	Metagenome / Metatranscriptome	280	N
F023059	Metagenome	211	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F027777	Metagenome / Metatranscriptome	193	N
F045612	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100260914	F023059	AGGA	MWEAVLASLAGLIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDAEVDSWIHRN
Ga0209596_100260916	F011284	N/A	MTSEQGVEKTEEKVFTKKHDLHLTTLQMAAVESMERKYKKGVVENSGTKLWEMPTARLVEESIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPQL
Ga0209596_10026092	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTVAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSETSDGLRSLNFFQTQNSMYVAVI
Ga0209596_100260923	F005846	N/A	MTSFPLPARPQASAVPASHIEFKKETAIEGKLNGWRGWFDQETKQGYNRHGKFALNHNLMAERILGAGIKPRFVDCEIMGQRTKTGKGTIVVMDAFEPANPKPYAERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINAIWEEMNYQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWKKQRIRW
Ga0209596_100260924	F005702	GGA	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKKPKEPELLLPTKNWVGRN
Ga0209596_100260926	F027777	AGGA	MSEEMPTFWHQEPDKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQHKQ
Ga0209596_10026094	F045612	GAG	MTHQYTYEDFMSSLKWLEAEGYIEKFYDNNGDLCVRVCEGAEDCEI
Ga0209596_10026095	F012433	GAGG	MSADQVADLRERLARIEERQTNIISILERHTSELAQWSSKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKMRVFSR
Ga0209596_10026096	F006138	GAGG	MAAVTIGTAGLSFGLVSEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0209596_10026097	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEVGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVAVRVVQTKGGQTLLISENATSEQRRAILKHL
Ga0209596_10026099	F025225	GAG	MSIELLNHDKFVLRLQQYQDASRKNMARVINDKLGDVAVTAIGTTYRTNTAKIASEIQRVEGQIVTRKVFKPFGLTKSGKVKKRKIGEYAFGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKEGVGGLGMGGGKPGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRAKLTRGDYSEEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEKVMADMAVYLARKNKESSDKLKL