Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1001657 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1001657 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18940
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (73.81%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

18940

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (73.81%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F077310	Metagenome / Metatranscriptome	117	Y
F090386	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10016571	F000369	N/A	VVEELLKGSTPTQIATTTGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADQSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQDILVRILKETTSICPKCKMEVAKRLSQITGVIESVPVEEADVV
Ga0209596_100165722	F077310	N/A	MSIDANSVIIVIVASILSGMGTAMINGIKESKREKNRQIEREQDMLKMELKDLEIKLYKLEKDLAEWRDKYYAAVQELIEVKSELENCLIELSHIVHHED
Ga0209596_100165725	F016396	AGGA	MMRKSERLRLLEMQVVRLEMMVELYSQSITNLLESQGLQTPNQLDAGKWYKAKLDTLDNE
Ga0209596_10016573	F000376	AGGA	MSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFTNVIEYKRIWKAAGYRPVGSIRKHFSEYVQQIVEETIDKNEDGTIQ
Ga0209596_100165731	F014017	N/A	MDKIVDYLDENHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKQNG
Ga0209596_100165734	F001280	GAG	MCIECGCEALGSQTGIIPVTVTDVSRDGESGVTFSMTSTPEQTRQFINE
Ga0209596_100165735	F026561	N/A	MSNFKKEDGTGMTPPPAAGSASGAVTSNDATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
Ga0209596_100165737	F006846	GAG	MLFNLVEKYLMRPKRLREAIQAVVRDNDELLRLIKKAENEEPTNLTWSEGDTWYGWTYNQSKKRYYFDDIGNTSLMGLWEDQWAREKEVDQLDMFENQVDFE
Ga0209596_100165741	F090386	AGGCGG	MAYSRFYDSDIYIYPSVGGWIECAGCFLNISEGVKTSPDEHTIFQSTKIYDDETLLMHIVQHRISGHNIPDDLEDEIMSDSERYGKLES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1001657

Overview

Ecosystem & Geography

Associated Families

Sequences