NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1001446

Scaffold Ga0209596_1001446


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1001446 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20466
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (43.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100144612F028084N/AMKKLLLILPLFLLISCSEPNLDSRELPTKYPETPTMGSADDISKELYKKXILK
Ga0209596_100144615F010817AGGALKKLASILALNFLFIGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFLGDDALITRQARERYNNLIKMYRIKFKKEKAIDLNEDSGIKPYKDTFGNELFLIDSEHLVYFGVLNSWLKEKVAQDNILDKTIDKINN
Ga0209596_100144616F091423GAGMPTGIIQALLSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSGIENAVKDKDLEEARKHISS
Ga0209596_100144617F014229GGAGMNKLQLAAVALLSVFLGACATTQTGKIDAPASVENALPYIKPAVILACTVVLDQATSGNDRIEKAKMINHVAVIVESLTLGSAPTPDQLQKALTDYLPVEKTHWVNYVSAIKDMYAVQFARVDGNGALAIKVLNAIASGCKDATASYVE
Ga0209596_100144618F009669N/AMKAMLSKIFGPNWRSSTSGVTTVIAITTAIAIHSDPTLVAFLPDIAEVYIIGISKLIAVVSGIVFALTVKDAAVTGGTVAQTIEAEKRTGENIXINYN
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