Scaffold Ga0209596_1000957

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000957
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25628
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002643	Metagenome / Metatranscriptome	540	Y
F008751	Metagenome / Metatranscriptome	328	Y
F062755	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100095714	F008751	N/A	MENLVIFIIGQSIIIIGGLIGIYVKISLKLKELEIRVNMVEKQDDQIYKKLDHILAEINKMAIALQNKQDRD
Ga0209596_100095715	F002643	N/A	MKYNQLNNLVASINAVIGNQETKIQKKLFKIYEKVKSHHESYQAQVEELRLDNASADDKDILLLDEKGGYKFTKEAIKKLTAQVTELGNKEFAFDKINVVNPAGLENFTFLEDWTTGIAFVKEEEEEL
Ga0209596_10009574	F062755	N/A	MKKEKQEVVCIRLPELIKKKVDAEAKKMYLAPSKLVSIIVQKYYESKN