Scaffold Ga0209596_1000342

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000342
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43330
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (48.62%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F006658	Metagenome / Metatranscriptome	367	Y
F012341	Metagenome / Metatranscriptome	281	Y
F013631	Metagenome / Metatranscriptome	269	Y
F013889	Metagenome / Metatranscriptome	267	Y
F016800	Metagenome / Metatranscriptome	244	Y
F031454	Metagenome / Metatranscriptome	182	Y
F049618	Metagenome / Metatranscriptome	146	N
F055663	Metagenome	138	Y
F080050	Metagenome / Metatranscriptome	115	N
F091930	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000342100	F013631	N/A	MNEIYSYTTSRWDWQDGNVNQMWIQEIEEAPDVYRYVAVAYNPRKDTSMVMSNPRGYLDTLHWVQKFCNSFSILPQYQ
Ga0209596_1000342104	F016800	AGGA	MFDAYTDYPFKELGDTANEEAPIRKCTILTWDRNKYCDVLVYFVDGDGDLRGHINSIKQFYLYKNEARIDDGEQFGDDELKTLSWTYR
Ga0209596_1000342106	F031454	N/A	MMFNSTLDLFCEHEDAEYADEFAMELEELASKYEVTCDYIIQEFILD
Ga0209596_100034216	F012341	N/A	MKIPMKEFFKMVAKTIAEPNTTITEQDKRKAIRVFLYLDEFMMENVPEYCGDTELGEIDFGAYAAGILDELEGK
Ga0209596_100034219	F055663	GGAGG	MTDFPNLKISQKQIVCPKHGTHNQIISSTVEGHEGHWCMLCWLESLGPSLPTVDQPND
Ga0209596_100034224	F004208	GGAG	MTYKLNPEAKAFSYTRENLFECITKIVAHPHNTITEHDQSRAIAIMLVFEDYVANFTHRDDDGEYYIPECDELDFQDFVIQKLGLEYYHYVDVDEVLK
Ga0209596_100034228	F049618	GGA	MRIEITYTPHPTKGYTATIWDGPDGIDEDSFVCRSLGECFEQIVMWRTLNALNYREATEN
Ga0209596_100034244	F013889	AGGAG	MTRTHRNLEGMHRGALRFPHTTKEIRQLDAIVNDPELKDYPVSGLNHMKSREHNLPTRWDDLVVSGYEQMDYK
Ga0209596_100034250	F006658	AGGAGG	MENEMSTGELIDSSKFQEELSKKNTLLESLNSPEMIKMREELAQAHKDSIDKSVGWYYNLSEEDKYKAVEALCHIICKAEREGTSHRGLQSTLGLYPQAFWIDDLMTVHNALYTEFQERESKEWKQDVENLKNSSLL
Ga0209596_100034288	F091930	GAGG	MSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEDEIEIEYALSV
Ga0209596_100034298	F080050	N/A	MTEQSYSFRGIFTDKNYSTRLGCIAVSAQDAWNTITEQNPTFLIQNWGFEGQVD