Metagenome / Metatranscriptome Family F091930

Overview

Basic Information

• Family ID: F091930
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 46 residues
• Representative Sequence: MSADELVLHKDYEDFASYLGVDYEDYVELVGDFELSEDEIEYALSI
• Number of Associated Samples: 82
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 71.70 %
• % of genes near scaffold ends (potentially truncated): 35.51 %
• % of genes from short scaffolds (< 2000 bps): 76.64 %
• Associated GOLD sequencing projects: 74
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (55.140 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (25.234 % of family members)
• Environment Ontology (ENVO): Unclassified (74.766 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (77.570 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 54.35%
  β-sheet: 0.00%
  Coil/Unstructured: 45.65%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13392	HNH_3	7.48
PF05315	ICEA	3.74
PF04965	GPW_gp25	1.87
PF04851	ResIII	1.87
PF16724	T4-gp15_tss	0.93
PF00004	AAA	0.93
PF02675	AdoMet_dc	0.93
PF13469	Sulfotransfer_3	0.93
PF01844	HNH	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
All Organisms	root	All Organisms	44.86 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Viruses	superkingdom	All Organisms → Viruses	44.86 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	6.54 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	6.54 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	6.54 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6.54 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.80 %
Kyanoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	2.80 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1.87 %
Glaucusvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Glaucusvirus	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
unclassified Myoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae	0.93 %
Glaucusvirus ssm5	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Glaucusvirus → Glaucusvirus ssm5	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.32 %
Synechococcus phage S-CBM2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2	0.93 %
Glaucusvirus ssm5	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Glaucusvirus → Glaucusvirus ssm5	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003277|JGI25908J49247_10020037	All Organisms → Viruses → Predicted Viral	1996
3300003277|JGI25908J49247_10033610	All Organisms → Viruses → Predicted Viral	1431
3300003388|JGI25910J50241_10015059	All Organisms → Viruses → Predicted Viral	2746
3300003393|JGI25909J50240_1050102	Not Available	869
3300003394|JGI25907J50239_1002251	All Organisms → Viruses → Predicted Viral	4680
3300003411|JGI25911J50253_10058922	All Organisms → Viruses → Predicted Viral	1281
3300003412|JGI25912J50252_10008731	All Organisms → Viruses → Predicted Viral	3396
3300003488|JGI25919J51413_1020413	Not Available	520
3300003616|JGI25928J51866_1113087	Not Available	571
3300004461|Ga0066223_1166650	All Organisms → Viruses → Predicted Viral	2750
3300005512|Ga0074648_1002528	Not Available	16470
3300005517|Ga0070374_10564585	Not Available	566
3300005582|Ga0049080_10062602	All Organisms → Viruses → Predicted Viral	1279
3300005582|Ga0049080_10118246	Not Available	896
3300005583|Ga0049085_10052767	All Organisms → Viruses → Predicted Viral	1460
3300005585|Ga0049084_10196531	Not Available	690
3300006639|Ga0079301_1183027	Not Available	607
3300007165|Ga0079302_1086814	Not Available	667
3300007214|Ga0103959_1169505	All Organisms → Viruses → Predicted Viral	3929
3300007538|Ga0099851_1000013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	60000
3300007539|Ga0099849_1103783	All Organisms → Viruses → Predicted Viral	1131
3300007539|Ga0099849_1349556	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Glaucusvirus → Glaucusvirus ssm5	526
3300007622|Ga0102863_1238603	Not Available	534
3300007625|Ga0102870_1238731	Not Available	513
3300007627|Ga0102869_1128193	Not Available	688
3300008962|Ga0104242_1026542	Not Available	994
3300009056|Ga0102860_1212425	Not Available	556
3300009151|Ga0114962_10050904	All Organisms → Viruses → Predicted Viral	2727
3300009154|Ga0114963_10494004	Not Available	652
3300009154|Ga0114963_10646046	Not Available	551
3300009155|Ga0114968_10009586	Not Available	6996
3300009155|Ga0114968_10073285	All Organisms → Viruses → Predicted Viral	2142
3300009158|Ga0114977_10385060	Not Available	784
3300009159|Ga0114978_10055357	All Organisms → Viruses → Predicted Viral	2716
3300009160|Ga0114981_10668977	Not Available	550
3300009160|Ga0114981_10672305	Not Available	548
3300009182|Ga0114959_10143162	All Organisms → Viruses → Predicted Viral	1276
3300009183|Ga0114974_10272514	All Organisms → Viruses → Predicted Viral	1004
3300009684|Ga0114958_10153101	All Organisms → Viruses → Predicted Viral	1167
3300010299|Ga0129342_1218174	Not Available	672
3300010334|Ga0136644_10138194	All Organisms → Viruses → Predicted Viral	1489
3300011010|Ga0139557_1024823	All Organisms → Viruses → Predicted Viral	1079
3300011011|Ga0139556_1064236	Not Available	550
3300011114|Ga0151515_10489	Not Available	17274
3300011116|Ga0151516_10373	Not Available	22551
3300012012|Ga0153799_1000678	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	10580
3300013372|Ga0177922_10340486	All Organisms → Viruses → Predicted Viral	1366
3300013372|Ga0177922_11081592	All Organisms → Viruses → Predicted Viral	1181
3300014819|Ga0119954_1000034	Not Available	42145
3300017701|Ga0181364_1016024	All Organisms → Viruses → Predicted Viral	1247
3300017736|Ga0181365_1078897	Not Available	807
3300017777|Ga0181357_1103323	Not Available	1079
3300017777|Ga0181357_1212714	Not Available	685
3300017778|Ga0181349_1123261	Not Available	953
3300017778|Ga0181349_1137879	Not Available	886
3300017778|Ga0181349_1177463	Not Available	749
3300017778|Ga0181349_1318126	Not Available	500
3300017780|Ga0181346_1030966	All Organisms → Viruses → Predicted Viral	2216
3300017780|Ga0181346_1195471	Not Available	732
3300018416|Ga0181553_10244443	All Organisms → Viruses → Predicted Viral	1019
3300019784|Ga0181359_1052987	All Organisms → Viruses → Predicted Viral	1563
3300019784|Ga0181359_1095107	Not Available	1100
3300019784|Ga0181359_1211167	Not Available	617
3300021368|Ga0213860_10000077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	36938
3300021962|Ga0222713_10300750	All Organisms → Viruses → Predicted Viral	1022
3300022149|Ga0196907_110893	Not Available	501
3300022190|Ga0181354_1161132	Not Available	695
3300022752|Ga0214917_10008328	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	10215
3300022752|Ga0214917_10094069	All Organisms → Viruses → Predicted Viral	1773
3300022752|Ga0214917_10308987	Not Available	698
3300023174|Ga0214921_10212778	Not Available	1189
3300023174|Ga0214921_10398301	Not Available	704
3300023174|Ga0214921_10442267	Not Available	644
3300027547|Ga0209864_1008091	All Organisms → Viruses → Predicted Viral	1165
3300027563|Ga0209552_1127701	Not Available	665
3300027586|Ga0208966_1037308	All Organisms → Viruses → Predicted Viral	1409
3300027608|Ga0208974_1096972	Not Available	790
3300027627|Ga0208942_1151946	Not Available	623
3300027708|Ga0209188_1184573	Not Available	762
(restricted) 3300027728|Ga0247836_1062399	All Organisms → Viruses → Predicted Viral	2034
(restricted) 3300027728|Ga0247836_1136171	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2	1092
(restricted) 3300027730|Ga0247833_1103882	All Organisms → Viruses → Predicted Viral	1249
(restricted) 3300027730|Ga0247833_1253418	Not Available	621
3300027732|Ga0209442_1258336	Not Available	619
3300027734|Ga0209087_1069517	All Organisms → Viruses → Predicted Viral	1554
3300027747|Ga0209189_1065557	All Organisms → Viruses → Predicted Viral	1709
3300027747|Ga0209189_1369166	Not Available	540
3300027754|Ga0209596_1000342	Not Available	43330
3300027754|Ga0209596_1002920	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13802
3300027763|Ga0209088_10050381	All Organisms → Viruses → Predicted Viral	2026
3300027763|Ga0209088_10130097	All Organisms → Viruses → Predicted Viral	1128
3300027785|Ga0209246_10189894	Not Available	804
(restricted) 3300027970|Ga0247837_1279529	Not Available	640
3300027973|Ga0209298_10278486	Not Available	658
3300027974|Ga0209299_1098782	All Organisms → Viruses → Predicted Viral	1147
(restricted) 3300028044|Ga0247838_1026770	All Organisms → Viruses → Predicted Viral	3510
(restricted) 3300028044|Ga0247838_1169866	Not Available	811
(restricted) 3300028114|Ga0247835_1135369	Not Available	911
3300028167|Ga0268285_1044121	All Organisms → Viruses → Predicted Viral	1119
3300028178|Ga0265593_1067832	Not Available	991
3300028191|Ga0265595_1056529	All Organisms → Viruses → Predicted Viral	1390
3300028191|Ga0265595_1070527	All Organisms → Viruses → Predicted Viral	1196
3300028394|Ga0304730_1005595	Not Available	7990
(restricted) 3300028571|Ga0247844_1094740	All Organisms → Viruses → Predicted Viral	1396
(restricted) 3300029286|Ga0247841_10521133	Not Available	752
3300031746|Ga0315293_11200327	Not Available	527

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.20%
Terrestrial	Environmental → Terrestrial	2.80%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	79.44%
Marine	Environmental → Aquatic → Marine	12.15%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	5.61%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.87%
Soil	Environmental → Terrestrial → Soil	0.93%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	46.73%
Lentic	Environmental → Aquatic → Freshwater → Lentic	31.78%
Coastal	Environmental → Aquatic → Marine → Coastal	6.54%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	5.61%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.67%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.87%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	45.79%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	31.78%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.54%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.74%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.93%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.93%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	25.23%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	22.43%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	14.95%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.48%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	6.54%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.74%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.74%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	3.74%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.87%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.93%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.93%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.93%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.93%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.93%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.93%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.93%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.93%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental
3300003488	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN	Environmental
3300003616	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN	Environmental
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental
3300007165	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16	Environmental
3300007214	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental
3300007625	Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02	Environmental
3300007627	Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02	Environmental
3300008962	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5	Environmental
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental
3300009684	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG	Environmental
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental
3300011011	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m	Environmental
3300011114	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb	Environmental
3300011116	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov	Environmental
3300012012	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m	Environmental
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental
3300014819	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A	Environmental
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental
3300022149	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3)	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental
3300027547	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 (SPAdes)	Environmental
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental
3300027586	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)	Environmental
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental
3300027627	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)	Environmental
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental
3300027730 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m	Environmental
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental
3300027747	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental
3300027970 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5m	Environmental
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental
3300027974	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)	Environmental
3300028044 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15m	Environmental
3300028114 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5m	Environmental
3300028167	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_120m	Environmental
3300028178	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m	Environmental
3300028191	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_50m	Environmental
3300028394	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)	Environmental
3300028571 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1	Environmental
3300029286 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18m	Environmental
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_100200378	3300003277	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDEIEYALSI*
JGI25908J49247_100336103	3300003277	Freshwater Lake	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEIEYALSI*
JGI25910J50241_100150592	3300003388	Freshwater Lake	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYVLIK*
JGI25909J50240_10501024	3300003393	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDXVELLSDFEFDEDEIEYALSI*
JGI25907J50239_100225111	3300003394	Freshwater Lake	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI*
JGI25911J50253_100589222	3300003411	Freshwater Lake	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI*
JGI25912J50252_100087319	3300003412	Freshwater Lake	MSXDXLVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI*
JGI25919J51413_10204132	3300003488	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDEIEYAL
JGI25928J51866_11130871	3300003616	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDEIEYALS
Ga0066223_11666504	3300004461	Marine	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSI*
Ga0074648_100252824	3300005512	Saline Water And Sediment	MSSNEMVLHDDYESFASYLGVDYDDYYEMINDLNLESEEIEIEYSLTI*
Ga0070374_105645851	3300005517	Freshwater Lake	MSSNELMLHKDYEDFASYLHVEYEDYVELVGDFELDEDEYALSI*
Ga0049080_100626026	3300005582	Freshwater Lentic	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELYEDEIEYALSI*
Ga0049080_101182464	3300005582	Freshwater Lentic	LHKDYEDFASSYLGVEYEDYVELVGDFELYEDEYALSI*
Ga0049085_100527671	3300005583	Freshwater Lentic	DELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYVLIK*
Ga0049084_101965313	3300005585	Freshwater Lentic	MSADELVLHKDYEDFASSYLGVEYEDYVELMGDFELYEDEYAL
Ga0074649_11114922	3300005613	Saline Water And Sediment	MISKDELNLHDDYETFASYLGIDYDDYVELLGDFNTDLDEIEIEYSMSV*
Ga0079301_11830271	3300006639	Deep Subsurface	MSADELVLHKDYEDFASSYLGVEYEDYVELMGDFELYEDEYALSI*
Ga0079302_10868141	3300007165	Deep Subsurface	MSADELVLHKDYEDFASSYLGVEYEDYVELMGDFELYEDEIEYALSI*
Ga0103959_11695057	3300007214	Freshwater Lake	MFEKEILRHDDYENFAKYLGVDYEDYVELLGEFYEEEDDVEIEYPVFA*
Ga0099851_100001311	3300007538	Aqueous	MSVNEMVLHDDYESFASYLGVDYDDYYEMINDLNLESEEIEIEYSLTI*
Ga0099849_11037833	3300007539	Aqueous	MSVNEMVLHDDYESFASYLGVDYEDYYEMINDLNLESEEIEIEYSLTI*
Ga0099849_13495561	3300007539	Aqueous	DDYESFASYLGVDYEDYYEMINDLNLESEEIEIEYSLTI*
Ga0102863_12386033	3300007622	Estuarine	SNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDEIEYALSI*
Ga0102870_12387311	3300007625	Estuarine	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEY
Ga0102869_11281932	3300007627	Estuarine	MSADELVLHKDYEDFASYLHVEYEDYVELVGDFELDEDEYVLIK*
Ga0104242_10265424	3300008962	Freshwater	FMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSI*
Ga0102860_12124252	3300009056	Estuarine	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDEI
Ga0114962_100509044	3300009151	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSV*
Ga0114963_104940043	3300009154	Freshwater Lake	FSAILVAYKFMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYSLIA*
Ga0114963_106460462	3300009154	Freshwater Lake	FSAILVAYKFMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEDEIEIEYSLIA*
Ga0114968_1000958627	3300009155	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEDEIEIEYALSV*
Ga0114968_1007328510	3300009155	Freshwater Lake	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELYEDEIEIEYSLSV*
Ga0114977_103850603	3300009158	Freshwater Lake	MSADELVLHKDYEDFASSYLGVEYEYYVELVGYYELYEDEYALSI*
Ga0114978_1005535710	3300009159	Freshwater Lake	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDYELYEDEYALSI*
Ga0114981_106689771	3300009160	Freshwater Lake	YKFMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSEDEIEIEYALSI*
Ga0114981_106723052	3300009160	Freshwater Lake	FFASYLGVDYDDYVELVGDFELSDDEIEIEYSLIA*
Ga0114959_101431622	3300009182	Freshwater Lake	MRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSI*
Ga0114974_102725143	3300009183	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYSLIA*
Ga0114958_101531016	3300009684	Freshwater Lake	FSAILVAYKFMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSV*
Ga0129342_12181742	3300010299	Freshwater To Marine Saline Gradient	DDYESFASYLGVDYDDYYEMINDLNLESEEIEIEYSLTI*
Ga0136644_101381942	3300010334	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSEDEIEIEYSLIA*
Ga0139557_10248236	3300011010	Freshwater	VLHKDYENFASYLRIDYEDYVELLSDFEFDEDEIEYALSI*
Ga0139556_10642362	3300011011	Freshwater	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYVLIK*
Ga0151515_1048943	3300011114	Freshwater	MFVDEFVRHDDYEFFASYLGVDYEDYVELIGEFELSEEEIEIEYALSI*
Ga0151516_1037337	3300011116	Freshwater	MSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEEEIEIEYALSI*
Ga0153799_10006785	3300012012	Freshwater	MIDDEMKSHDDYESFAKYLGVDYEDYAEMIGDFELCEDEIEIEYALSI*
Ga0177922_103404866	3300013372	Freshwater	MSADELVLHKDYEDFASSYLGVEYEDYVELMGDFELDEDEYVLIK*
Ga0177922_110815925	3300013372	Freshwater	MSSNEFVLHNDYENFASYLRIDYEDYVELLSDFEFDEDEIEYALSI*
Ga0119954_100003438	3300014819	Freshwater	MSADELVLHKDYEDFASYLGVDYEDYVELVGDFELSEDEIEYALSI*
Ga0181364_10160244	3300017701	Freshwater Lake	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELDEDEYVLIK
Ga0181365_10788971	3300017736	Freshwater Lake	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDED
Ga0181357_11033234	3300017777	Freshwater Lake	SADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI
Ga0181357_12127141	3300017777	Freshwater Lake	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEY
Ga0181349_11232614	3300017778	Freshwater Lake	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEIEYSLSI
Ga0181349_11378793	3300017778	Freshwater Lake	MSSNELMLHKDYEDFASYLHVEYEDYVELMGDFELDEDEYALSI
Ga0181349_11774634	3300017778	Freshwater Lake	SADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEIEYALSI
Ga0181349_13181262	3300017778	Freshwater Lake	MSSNELMLHKDYEDFASYLHVEYEDYVELVGDFELDDDEY
Ga0181346_10309662	3300017780	Freshwater Lake	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI
Ga0181346_11954713	3300017780	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDQIEYALSI
Ga0181553_102444431	3300018416	Salt Marsh	MSADELVLHKDYEDFASYLGVDYEDYVELVGDFELSEDEIEYALSI
Ga0181359_10529877	3300019784	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDEDEIEYALSI
Ga0181359_10951071	3300019784	Freshwater Lake	DYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI
Ga0181359_12111671	3300019784	Freshwater Lake	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEIEYALSI
Ga0213860_100000779	3300021368	Seawater	MSVNEMVLHDDYESFASYLGVDYDDYYEMINDLNLESEEIEIEYSLTI
Ga0222713_103007503	3300021962	Estuarine Water	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYALSI
Ga0196907_1108932	3300022149	Aqueous	MSVNEMVLHDDYESFASYLGVDYEDYYEMINDLNLESEEIEIEYSLTI
Ga0181354_11611322	3300022190	Freshwater Lake	MSSNELMLHKDYEDFASYLHVEYEDYVELVGDFELDEDEYALSI
Ga0214917_100083284	3300022752	Freshwater	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELYEDEIEYALSI
Ga0214917_100940697	3300022752	Freshwater	MSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEEEIEIEYALSI
Ga0214917_103089871	3300022752	Freshwater	MSADELVLHKDYEEFASYLGVDYEDYVELVGDFELSEDEIEYALSI
Ga0214921_102127782	3300023174	Freshwater	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSEDEIEIEYALSI
Ga0214921_103983012	3300023174	Freshwater	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSV
Ga0214921_104422673	3300023174	Freshwater	DELVRHDDYEFFASYLGVDYDDYVELIGDFELSEEEIEIEYALSI
Ga0209864_10080916	3300027547	Sand	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELYEDEI
Ga0209552_11277013	3300027563	Freshwater Lake	MSADELVLHKDYEEFASSYLGVEYEDYVELLSDFEFDEDEIEYALSI
Ga0208966_10373081	3300027586	Freshwater Lentic	MSSNELMLHKDYEDFASYLHVEYEDYVELVGDFELDEDEIEYALSI
Ga0208974_10969722	3300027608	Freshwater Lentic	MIDDEMKSHDDYESFAKYLGVDYEDYAEMIGDFELCEDEIEIEYALSI
Ga0208942_11519462	3300027627	Freshwater Lentic	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELDEDEYVLIK
Ga0209188_11845733	3300027708	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSI
(restricted) Ga0247836_10623993	3300027728	Freshwater	MIVDEMKSHDDYESFASYLGVEYEDYIELVGEFELGEDEIEYALSI
(restricted) Ga0247836_11361712	3300027728	Freshwater	MTADDLKSHDDYESFASYLGVDYEDYIELVGEFEVGEDEVEYALTI
(restricted) Ga0247833_11038825	3300027730	Freshwater	MSADEMKSHDDYESFAKYLGVDYEDYAEMIGDFELCENIIDVEYTLVNF
(restricted) Ga0247833_12534183	3300027730	Freshwater	YKFNEVTMIVDEMKSHDDYESFASYLGVEYEDYIELVGEFELIELVGKFELGEDEIEGD
Ga0209442_12583361	3300027732	Freshwater Lake	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFEFDE
Ga0209087_10695175	3300027734	Freshwater Lake	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDYELYEDEYALSI
Ga0209189_10655575	3300027747	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSEDEIEIEYSLIA
Ga0209189_13691661	3300027747	Freshwater Lake	AILVAYKFMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSI
Ga0209596_100034288	3300027754	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEDEIEIEYALSV
Ga0209596_100292012	3300027754	Freshwater Lake	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELYEDEIEIEYSLSV
Ga0209088_100503813	3300027763	Freshwater Lake	MSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYSLIA
Ga0209088_101300976	3300027763	Freshwater Lake	SVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYALSI
Ga0209246_101898942	3300027785	Freshwater Lake	MSSNELMLHKDYEDFASYLHVEYEDYVELVGDFEFDEDEIEYALSI
(restricted) Ga0247837_12795293	3300027970	Freshwater	YKFNEVTMIVDEMKSHDDYESFASYLGVEYEDYIELVGEFELGEDEIEYALSI
Ga0209298_102784863	3300027973	Freshwater Lake	LFSAILVAYKFMRSQMSVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSEDEIEIEYALSI
Ga0209299_10987825	3300027974	Freshwater Lake	SVDELVRHDDYEFFASYLGVDYDDYVELVGDFELSDDEIEIEYSLIA
(restricted) Ga0247838_102677014	3300028044	Freshwater	MIVDEMKSHDDYESFASYLGVEYEDYIELVGEFELIELVGKFELGEDEIEGD
(restricted) Ga0247838_11698661	3300028044	Freshwater	DYESFASYLGVEYEDYIELVGEFELGEDEIEYALSI
(restricted) Ga0247835_11353695	3300028114	Freshwater	EMKSHDDYESFAKYLGVDYEDYAEMIGDFELCENIIDVEYTLVNF
Ga0268285_10441212	3300028167	Saline Water	MSSNEFVLHKDYENFASYLRIDYEDYVELLSDFELDEDEYALSI
Ga0265593_10678323	3300028178	Saline Water	MSTDELVLHKDYEEFASSYLGVEYEDYVELMGDFELYEDEYALSI
Ga0265595_10565296	3300028191	Saline Water	MSSNELMLHKDYEDFASYLHVEYEDYVELVGDFELDED
Ga0265595_10705274	3300028191	Saline Water	MSADELVLHKDYEDFASSYLGVEYEDYVELMGDFELYEDEYALSI
Ga0304730_100559527	3300028394	Freshwater Lake	MRSQMSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEDEIEIEYALSV
(restricted) Ga0247844_10947404	3300028571	Freshwater	MIVDEMKSHDDYESFAKYLGVDYEDYAEMIGDFELCENIIDVEYTLVNF
(restricted) Ga0247841_105211333	3300029286	Freshwater	TMIVDEMKSHDDYESFASYLGVEYEDYIELVGEFELGEDEIEYALSI
Ga0315293_112003271	3300031746	Sediment	MSADELVLHKDYEEFASSYLGVEYEDYVELMGDFELYEDEIEYALSI