NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000282

Scaffold Ga0209596_1000282


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47590
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (11.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008423Metagenome333Y
F021090Metagenome220Y
F031094Metagenome183Y
F038238Metagenome / Metatranscriptome166N
F062755Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100028214F021090N/AMITINNDQLKELEAFINQIPTAYGLPLLQFLGKLNAEQNPPVEEVTEE
Ga0209596_100028223F031094N/AMRLHNAYILKLKTKSMKTVISYNNNFYPYNFQFIPLGGDNIFLDYELDETRFFLVKFRTIDVANNQIILSIVKI
Ga0209596_100028225F062755N/AMKVEKKEVVCIRLPESIKKKVDAEAKKMYLASSKLVSIIVQKYYETKNQ
Ga0209596_100028226F038238N/AMKLDYQGKQLKLHKKATCLLELLKKAQSEQWRQEKLLAEWRSAGNFDNVRLFTHENNYLIRIAELNDIQKRILKSYYWLIVELYSISENFMLPINITQ
Ga0209596_100028264F021090N/AMITINNDQIKELEAFINTIPTAYGLPLLQFLGKLNAEQNPPVEEAKEV
Ga0209596_100028273F008423N/AMQPLIYQGKQLKLHQRATCLLELLKNAQARQSSIESDLTKWRGATWDNPIKLMNKYEDDYLIKIARMNQIQKRILKSYHFLILDLYEITEDFMLPINLLHF
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