Scaffold Ga0209596_1000016

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000016
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171522
• Total Scaffold Genes: 216
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 160 (74.07%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012437	Metagenome / Metatranscriptome	280	Y
F012571	Metagenome	279	Y
F024498	Metagenome / Metatranscriptome	205	Y
F026542	Metagenome / Metatranscriptome	197	Y
F038232	Metagenome / Metatranscriptome	166	Y
F077294	Metagenome	117	Y
F078617	Metagenome / Metatranscriptome	116	N
F099180	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000016106	F024498	AGGA	MSKVAWDYIVPVKLPADLKGVTPGKLPANLLVSIPGGGKLHKLAANAWLAMVTKAAAEGIELKPTSSRRYI
Ga0209596_1000016119	F026542	AGGA	MNNQTLEKLQQLLSDFLGPQIQEVITSYAESGLSNKYFIEIPDEDTIDLGLDNLASLVAKTSNVYGRAARFAGMARANYKLMEGKYKKKYKSSRVGKNEAEREAAAMEAAEDEYSALITCEAILSLAESMEGAARIASESARKLMDKVQSMQIAASRESKGHYLESDFTTY
Ga0209596_100001613	F077294	GGA	MSEYPTDYPRRGFHICHGCGNMAPHHTQKDISDNGWAFDLNSFGSYGGFTDPIGEQPEWVRLCHDCVLKFLNTFPLIGLLVKAGNHSQFGPNEKPCCKYAWKAEWIGESSITYIASEDGQQWIAR
Ga0209596_1000016130	F012571	AGGAG	MPVQDEDDVIGVCTECKSDQPMHYMYNSPFAQDGKSVPCKYCGGVVVIVYREIRDQSLNDSDTGRGIN
Ga0209596_1000016140	F078617	AGGA	MQTKVFLSGAIEEVGIFAHGWRNEAVKLLADRGFQAVNPMDYALEEQGCEPKEIVSKNMFLQKSCDIILVEYTIPNRAYIGTDFEMTWAYMNNQPVVTFADKSYLNRVYLNFLSTKVALSLGDAVEYICNTYPSSK
Ga0209596_1000016170	F099180	N/A	MDPEQLYELKKRYGSIFSINVKSKDIFFRELTFEEYDKIVEYKNSQDHSSADVEDVILAAAVVYPSDFDVNSLSPGLISSLSQQVVDVSGFYSAKIAKDILEGKREKANEVRSLMKAFVLATIHAYSPGDLDKMTFSQLAENVALSEKIIEIQQSINGVEPSNINLQLIDPEEEILKERTSEARHNLSKKPGEAAYQDPIAQKLWGMK
Ga0209596_100001642	F038232	AGGA	MSKINANKLRKKLQKLIPNSSFDKDNEGQVIIYTGLKETKDGNYKELK
Ga0209596_100001688	F012437	GGAGG	MNKIKNILNRIIATFAASGLGIIGAGAVAGVPVWKACFMAGIAGVAVVIEGLSREFLDDGILSDAEINEVFDIVDKKSKK