Scaffold Ga0209192_10003929

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10003929
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9699
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041192	Metagenome / Metatranscriptome	160	Y
F062164	Metagenome / Metatranscriptome	131	Y
F074019	Metagenome	120	N
F097348	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_1000392913	F062164	N/A	MAGKSKQDGAQGSDNWGGPRPNSGRPSNGEVINIRQILDDNIDVDVVIQKLLERIESGDQRAIELFLKYRAGLPKQEIDIHTTGEIDHNITLKGLISFDED
Ga0209192_1000392915	F074019	N/A	MMTPPTIEFLQKCADTTEITNTLGKWLDAKPENKELLGIYNSFLRTFVYINNLELRDYGFNRLISEARNSRNNAVLRARKSEEALEIAEAKVKDLEAKLKIFGI
Ga0209192_100039293	F097348	N/A	MSTLDTLYNNREMEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAITDREVIRD
Ga0209192_100039297	F041192	N/A	MECLDYMSWALKGNHLRVYAVPTKENYTYKKGTKTVNLCYVKLVVEIGNAKHLGTEVYKQHLMHEKVCEIYKFYYDNHLTKTK