Scaffold Ga0209084_1015161

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1015161
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4384
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F071245	Metagenome	122	Y
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_101516110	F003080	AGGA	MTTAKEITDNLIYRAKNIQEFVVERAMPDIPTGLIKFSIQHTAGEKYARIFVPALTQEEAEQMVDEWFQENV
Ga0209084_10151616	F071245	AGG	MSPSDHEVIVDWTPKTGVDWWNETCAMVLEVFGLPGHRFIYTPSEDFMTFCFKSKKDADLCRILLSERL
Ga0209084_10151619	F076100	GAG	MRYITNKFDSIRLPVEPGLLEWLQETYPASKYFIKDIE