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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027749 Open in IMG/M |
| Scaffold ID | Ga0209084_1000462 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38248 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (81.67%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037702 | Metagenome | 167 | Y |
| F046202 | Metagenome | 151 | Y |
| F048114 | Metagenome | 148 | Y |
| F056420 | Metagenome | 137 | Y |
| F077007 | Metagenome / Metatranscriptome | 117 | N |
| F078231 | Metagenome | 116 | Y |
| F096599 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209084_100046231 | F056420 | AGGA | MSQVYKLEEHLMMLLVEDKLCFEEGDWERLDRIRLAIDDTRDQIAKAKGN |
| Ga0209084_100046235 | F096599 | AGGA | MKKDIQVTICTDDDVRVSVDEWDNGSVWLHLQGRGASMNCTLTRPEAEQMLGALQAILAKEVTA |
| Ga0209084_100046241 | F046202 | AGGAGG | MFESFGDFFWTFMAMSGFMFWIFFAGFVALVIRRNRQKRGIYYEQR |
| Ga0209084_100046243 | F078231 | AGAAGG | MKTEPELIDIYAMFALMALMQKTTKTKSKIDTAYEAFEQAQAMIEVRADFIERKE |
| Ga0209084_100046245 | F048114 | GGAGG | LNEEEKAIGEREYMYRCLVREVIKMRLKNRDSAYRWLRGYVDDTRRWKKGWNELHPESKLEDDVRDQWNKGNRGNAGEWK |
| Ga0209084_100046253 | F077007 | N/A | MRLMRNQQATHVDFFQFRGLIETNPKATPCNIDMVFERKCKFFVGEWKREGEGMSQGQGLLLRNLARQPQFTVVIIQGNTDGDTVVEKFEQLCSDGRFRVRGKSFDDLKSFVTRWYNWADAQEFQ |
| Ga0209084_100046256 | F037702 | AGGAG | MLSEEEIRQVYFYCDEKLPNAIYADEVDIIQFAHKIAAYAEVAHARKEHARCVEIVSHMNPEVAKALETQRPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |