Metagenome Family F096599

Basic Information
Family ID	F096599
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	63 residues
Representative Sequence	MNDIETTIYTADNVRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMLKGLQAILAKEVTA
Number of Associated Samples	65
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	1.92 %
% of genes from short scaffolds (< 2000 bps)	5.77 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Most Common Taxonomy
Group	Unclassified (87.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (59.615 % of family members)
Environment Ontology (ENVO)	Unclassified (81.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (84.615 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.58% β-sheet: 29.67% Coil/Unstructured: 52.75%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF16786	RecA_dep_nuc	6.73
PF06067	DUF932	4.81
PF08401	ArdcN	2.88
PF07120	DUF1376	2.88
PF05866	RusA	1.92
PF04545	Sigma70_r4	1.92
PF12965	DUF3854	1.92
PF01464	SLT	0.96
PF01391	Collagen	0.96
PF08241	Methyltransf_11	0.96
PF08291	Peptidase_M15_3	0.96
PF13649	Methyltransf_25	0.96
PF04404	ERF	0.96
PF03118	RNA_pol_A_CTD	0.96
PF03237	Terminase_6N	0.96
PF00145	DNA_methylase	0.96
PF13392	HNH_3	0.96
PF01555	N6_N4_Mtase	0.96
PF01541	GIY-YIG	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	2.88
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	2.88
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	1.92
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.96
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.96
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.96
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.96
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
All Organisms	root	All Organisms	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Viruses	superkingdom	All Organisms → Viruses	10.58 %
cellular organisms	root	All Organisms → cellular organisms	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	8.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	8.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	8.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.92 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.92 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.92 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009151\|Ga0114962_10000734	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	28607	Open in IMG/M
3300009151\|Ga0114962_10006352	Not Available	9130	Open in IMG/M
3300009151\|Ga0114962_10144966	All Organisms → Viruses → Predicted Viral	1433	Open in IMG/M
3300009152\|Ga0114980_10035356	Not Available	3076	Open in IMG/M
3300009158\|Ga0114977_10001983	Not Available	13317	Open in IMG/M
3300009181\|Ga0114969_10446966	Not Available	732	Open in IMG/M
3300009182\|Ga0114959_10009862	Not Available	6647	Open in IMG/M
3300010230\|Ga0136236_1000635	Not Available	4891	Open in IMG/M
3300010885\|Ga0133913_10133874	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6636	Open in IMG/M
3300019784\|Ga0181359_1002705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	5232	Open in IMG/M
3300019784\|Ga0181359_1015794	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2797	Open in IMG/M
3300021354\|Ga0194047_10223295	Not Available	741	Open in IMG/M
3300027708\|Ga0209188_1003053	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11858	Open in IMG/M
3300027708\|Ga0209188_1036439	All Organisms → cellular organisms → Bacteria → Proteobacteria	2300	Open in IMG/M
3300027733\|Ga0209297_1008654	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5039	Open in IMG/M
3300027741\|Ga0209085_1000287	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	37753	Open in IMG/M
3300027749\|Ga0209084_1000462	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	38248	Open in IMG/M
3300027749\|Ga0209084_1384977	Not Available	505	Open in IMG/M
3300027759\|Ga0209296_1002906	Not Available	11924	Open in IMG/M
3300027763\|Ga0209088_10000224	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	41763	Open in IMG/M
3300028025\|Ga0247723_1008982	All Organisms → Viruses → Predicted Viral	4055	Open in IMG/M
3300028394\|Ga0304730_1206480	Not Available	739	Open in IMG/M
3300031726\|Ga0302321_101549753	Not Available	764	Open in IMG/M
3300034012\|Ga0334986_0001109	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	23493	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.15%
Terrestrial	Environmental → Terrestrial	3.85%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	92.31%
Marine	Environmental → Aquatic → Marine	3.85%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.88%
Peat	Environmental → Terrestrial → Peat	0.96%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	72.12%
Lentic	Environmental → Aquatic → Freshwater → Lentic	17.31%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.92%
Coastal	Environmental → Aquatic → Marine → Coastal	1.92%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.96%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.96%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	70.19%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	17.31%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.96%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	59.62%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.35%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.73%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.92%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.92%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.92%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.96%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.96%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009187	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG	Environmental	Open in IMG/M
3300009194	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT	Environmental	Open in IMG/M
3300009684	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010230	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA	Environmental	Open in IMG/M
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300015050	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300021354	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m	Environmental	Open in IMG/M
3300021601	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L224-21m	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027712	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental	Open in IMG/M
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027747	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028393	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)	Environmental	Open in IMG/M
3300028394	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300033979	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25914J50564_101206021	3300003429	Freshwater Lake	LKGNYPXPDIQTTIYTEDNVRLHVDEWDNGGVWLSLQAHGSSQYASLTRKEAEQLIAGLQTILAKEVTA*
Ga0066179_100485613	3300004126	Freshwater Lake	MPDIQTTIYTEDNVRLHVDEWDNGGVWLSLQAHGSSQYASLTRKEAEQLIAGLQ
Ga0065861_11415872	3300004448	Marine	MSEEIETIIYTEEQVRISVDQWDNGGVWLSLQARSANMHTTLTRAEAEQMLKGLQAVLGAEVAA*
Ga0066222_10783883	3300004460	Marine	MSEEIETIIYTEEQVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA*
Ga0049081_101479592	3300005581	Freshwater Lentic	MTNEIETTIYTEEGVRISVDEWDDGGVWLSIRNNGASIYATMTRADAEQILAGLQKILNKEVTA*
Ga0114347_10331174	3300008114	Freshwater, Plankton	MTNEIETTIYTEEGVRISVDEWDDGGVWLSLRNSGASLYTTMTRADAEQLLAGLQKILSKEVTA*
Ga0114973_101729693	3300009068	Freshwater Lake	STTGLRPQKGNIMNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTTLTRTEAETMLKGLQAILSKEVTA*
Ga0114973_102824842	3300009068	Freshwater Lake	MLEEIETIIYTEEQVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA*
Ga0114962_1000073426	3300009151	Freshwater Lake	MKKDIQVTICTDDDVRVSVDEWDNGSVWLHLQGRGASMNCTLTRPEAEQMLGALQAILAKEVTA*
Ga0114962_100063525	3300009151	Freshwater Lake	MKDIETTIHTDDGVRVSVDEWDDGGVWLHLQGRGASMHCTLTRTEAEQMLAGLQAILAKEVTA*
Ga0114962_101449662	3300009151	Freshwater Lake	MSQEIETIISTENGVRVSVSEWYDGCVWLSLINRGSSAYTSLTRAEADQLLAGLQAILSKEVST*
Ga0114962_101501845	3300009151	Freshwater Lake	MEINTIIHTEEQVRVSVDQYDEGGVWLSLQARGASMYAVLTRAEAEQMLAGLQAILAQEVVA*
Ga0114962_101739182	3300009151	Freshwater Lake	MNDIETTIYTADSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILSKEVAA*
Ga0114962_103336251	3300009151	Freshwater Lake	MNDIETTIYTADNVRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMLKGLQAILAKEVTA*
Ga0114962_103719353	3300009151	Freshwater Lake	MNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTTLTRTEAETMLKGLQAILAKEVTA*
Ga0114980_100353566	3300009152	Freshwater Lake	MNEEIQTVIFTEENVRISVDEYNEGVWLSLQGHGASMYTTLTIEEANQMLAGLQKVLNKEVTA*
Ga0114980_101542072	3300009152	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSANMHTTLTRAEAEQMLKGLQAVLGVEVAA*
Ga0114963_100578574	3300009154	Freshwater Lake	MNDIETTIYTEDSIRISVDEWDDGGVWLGLQARGATMHAVLTRTEAEAMLKGLQAILAKEVTA*
Ga0114963_101367564	3300009154	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGAEVAA*
Ga0114963_101812481	3300009154	Freshwater Lake	NTMKKDIQVTICTDDDVRVSVDEWDNGSVWLHLQGRGASMNCTLTRPEAEQMLGALQAILAKEVTA*
Ga0114963_102245063	3300009154	Freshwater Lake	MTTTFEEQTMNEIETTIYTEDSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILSKEVAA*
Ga0114968_100529116	3300009155	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA*
Ga0114968_106816882	3300009155	Freshwater Lake	MSNDLQTTIYTDDKVRVSVDQWDDGGAWLSIARSGASMYTALTRAEAEQLLAGLQAILAKEVTA*
Ga0114977_1000198326	3300009158	Freshwater Lake	MNEDMETALYTEQQVRISVDEWDDGGVWLALQGRNASMHATLTRAEAQRILKGLQEILAIEVTA*
Ga0114981_104544561	3300009160	Freshwater Lake	MNNEIETTIYTEEGVRISVDEWDDGGVWLSLRNNGASLYTTMTRADAEQLLAGLQKILSKEVTA*
Ga0114975_106195263	3300009164	Freshwater Lake	MNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTTLTRTEAETMLKGLQAILAKEVT
Ga0114975_106568572	3300009164	Freshwater Lake	MNEEIQTVIFTEENVRISVDEYNEGVWLSLQGHGASMYTTLTIEEAKQMLAGLQKVLNKEVTA*
Ga0114969_104469661	3300009181	Freshwater Lake	TIYTEEGVRISVDEWDDGGVWLSIRNNGASLYTTMTRADAEQLLAGLQKILNKEVTA*
Ga0114969_106048512	3300009181	Freshwater Lake	MSNDLQTTIYTDDKVRVSVDQWDDGGAWLSIARSGASMYTALTRAEAEQLLAGLQAILAKGVTA*
Ga0114959_1000986215	3300009182	Freshwater Lake	MTTTFEEQTMNEIETTIYTEDSIRISVDEWDNGGVWLGLQARGSSMHAVLTRVEAETMLKGLQAILSKEVTA*
Ga0114959_101592394	3300009182	Freshwater Lake	METNTVIYTEEQVRISVDQYDDGGVWLGLQARGASMYAVLTRAEAEQVLAGLQAILSKEVAA*
Ga0114974_1000243118	3300009183	Freshwater Lake	MEINTIIHTEEQVRVSVDQYDEGVWLSLQARGASMYAVLTRAEAEQMLAGLQAILAQEVVA*
Ga0114976_101371663	3300009184	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSANMHTTLTRAEAEQMLKGLQAVLGAEVAA*
Ga0114972_104101221	3300009187	Freshwater Lake	TMNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTMLTRTEAETMLKGLQAILSKESGV*
Ga0114983_100469710	3300009194	Deep Subsurface	MTEIQTTIYTEDNVRVHVDEWDDGGVWLSLQSRGSSHYVALTRKEAEQMLKGLQTILAKEVTA*
Ga0114958_100957411	3300009684	Freshwater Lake	KIMNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTTLTRTEAETMLKGLQAILAKEVTA*
Ga0114958_104503191	3300009684	Freshwater Lake	MNDIETTIYTADNVRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMLKG
Ga0114967_101561352	3300010160	Freshwater Lake	MTNEIETTIYTEEGVRISVDEWDDGGVWLSIRNNGASLYTTMTRADAEQLLAGLQKILNKEVTA*
Ga0136236_10006357	3300010230	Freshwater	MEINTIIHTEEQVRVSVDQYDEGVWLSLQARGASMYAVLTRAEAEQMLAGLQAILNKEVTA*
Ga0136644_100676912	3300010334	Freshwater Lake	MKDIETTIHTDDGVRVSVDEWDDGGVWLHLQGRGASMHCTLTRTEAEQMLAGLQAILA*
Ga0136644_101100712	3300010334	Freshwater Lake	MNEIETTIYTEDSIRISVDEWDNGGVWLGLQARGSSMHAVLTRVEAETMLKGLQAILSKEVTA*
Ga0136644_102508072	3300010334	Freshwater Lake	MSEEIETIIYTKEHVRISVDQWDDGGVWLSLQARSASMHTTLTQAEAEQMLKGLQAVLSAEVAA*
Ga0136644_105117702	3300010334	Freshwater Lake	MNDIETTIYTADSIRISVDEWDDGGVWLGLQGRGASMHAVLTRTEAEAMLKGLQAILAKEVTA*
Ga0133913_1013387414	3300010885	Freshwater Lake	METNTIIHTEEKVRISIAEYDEGGAWLSLQASGASMYAVLTRAEAEQMLAGLQAILAKEVV*
Ga0133913_120377811	3300010885	Freshwater Lake	MNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTMLTRTEAETMLKGLQAILSKESGV*
Ga0133913_126415752	3300010885	Freshwater Lake	MKDIETTIYTADNVRISIDEWDDGGVWLGLQARGATMHAVLTRAEAETMLNGLQAILSKEVTA*
Ga0177922_105665413	3300013372	Freshwater	MEDIETTIYTEENVRISVDEWDSGGVWLGLQGRGASMHCTLTRTEAEQMLAGLQAILAKEVTA*
Ga0181338_10117772	3300015050	Freshwater Lake	MNNEIETTIYTEEGVRISVDEWDDGGVWLSIRNNGASIYATMTRADAEQILAGLQKILNKEVTA*
Ga0181338_10433771	3300015050	Freshwater Lake	MNDIETTIYTADSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILAKEVTA*
Ga0181338_10635452	3300015050	Freshwater Lake	MKDIQTTIHTDDDVRVSVDEWNDDCVWLHLQGRGASMHCTLTRAEAEQMLAGLQAILAKKVTA
Ga0181364_10178163	3300017701	Freshwater Lake	VPDIQTTIYTEDNVRLHVDEWDNGGVWLSLQAHGSSQYASLTRKEAEQLIAGLQTILAKEVTA
Ga0181350_10145504	3300017716	Freshwater Lake	MTGKIETIIRTEGGVRVSVDEWDDGGVWLSLINRGSSTYTPLTRAEAEQLLVGLQAILSKEVTA
Ga0181350_11298421	3300017716	Freshwater Lake	MNNEIETTIYTEEGVRISVDEWDDGGVWLSIRNNGASIYATMTRADAEQILA
Ga0181347_10486724	3300017722	Freshwater Lake	MSKDIETTIYTQDEVRISVDEWDNGGVWLGLQARGSSMHCTLTRKEAE
Ga0181356_11872681	3300017761	Freshwater Lake	MSKDIETTIYTQDEVRISIDEWDNGGVWLGLQARGSSMHCTLTRKEAEQMLKNLQAVLSKEVTA
Ga0181358_11387491	3300017774	Freshwater Lake	KIETIIRTEGGVRVSVDEWDDGGVWLSLINRGSSTYTPLTRAEAEQLLVGLQAILSKEVT
Ga0181357_10414765	3300017777	Freshwater Lake	MPDIQTTIYTEDNVRLHVDEWDNGGVWLSLQAHGSSQYASLTRKEAEQLIAGLQAILAKEVTA
Ga0181346_11000053	3300017780	Freshwater Lake	MKKDINITIHTDDDVRVSVDEWNDDCVWLHLQGRGASMHCTLTRAEAEQMLAGLQAILAKKVTA
Ga0181563_101043372	3300018420	Salt Marsh	MKDIETTIHTDDGVRVSVDEWDDGGVWLHLQGRGASMHCTLTRTEAEQMLAGLQAILAKEVTA
Ga0181359_100270511	3300019784	Freshwater Lake	MSKDIETTIYTQDEVRISVDEWDNGGVWLGLQARGSSMHATLTRKEAEQMLKNLQAVLSKEVTA
Ga0181359_10157946	3300019784	Freshwater Lake	MPDIQTTIYTEDNVRLHVDEWDNGGVWLSLQAHGSSQYASLTRKEAEQLIAGLQTILAKEVTA
Ga0181359_10158142	3300019784	Freshwater Lake	MNNEIETTIYTEEGVRISVDEWDDGGVWLSIRNNGASIYATMTRADAEQILAGLQKILNKEVTA
Ga0207193_11666835	3300020048	Freshwater Lake Sediment	MNNEIETTIYTEEGVRISVDEWDDGGVWLSLRNSGASLYTTMTRADAEQLLAGLQKILSKEVPA
Ga0194047_102232951	3300021354	Anoxic Zone Freshwater	MTEINTIIYTEEKVRISVDQNDDGVWLSLQARGASMYAVLTRDEAKQMIAGLQAILEKEI
Ga0194061_10654632	3300021601	Anoxic Zone Freshwater	MKDIQTTIHTDDDVRVSVDEWNDDCVWLHLQGRGASMHCTLTRPEAEQMLAGLQAILAKEVTA
Ga0222714_101057436	3300021961	Estuarine Water	MSDIQTTIYTEDNVRVHVDEWDDGSVWLSLQAHGSSQYAVLNRKEAEQMLKGLQAILAKEVEA
Ga0181354_10411192	3300022190	Freshwater Lake	MNDIETTIYTADSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILAKEVTA
Ga0214919_101188874	3300023184	Freshwater	MKDIETTIHTDDGVRVSVDEWDDGGVWLHLQGRGASMHCTLTRSEAEQMLAGLQAILAKEVTA
Ga0214919_105395302	3300023184	Freshwater	MNDIETTIYTADNVRISIDEWDDGGVWLGLQARGATMHAVLTRAEAEAMLNGLQAILAKEVTA
Ga0209188_100305317	3300027708	Freshwater Lake	MNDIETTIYTADSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILSKEVAA
Ga0209188_10364396	3300027708	Freshwater Lake	MNEIETTIYTEDSIRISVDEWDNGGVWLGLQARGSSMHAVLTRVEAETMLKGLQAILSKEVTA
Ga0209188_12525093	3300027708	Freshwater Lake	METNTVIYTEEQVRISVDQYDDGGVWLGLQARGASMYAVLTRAEAEQVLAGLQ
Ga0209499_10519435	3300027712	Freshwater Lake	METNTVIYTEEQVRISVDQYDDGGVWLGLQARGASMYAVLTRAEAEQVLAGLQAILAIEVAA
Ga0209499_12004702	3300027712	Freshwater Lake	MNEIETTIYTADSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILSKEVAA
(restricted) Ga0247836_11526093	3300027728	Freshwater	MSDIETTIYTEDDVRISVDEWDDGGVWLGLQARGSSMHATLTRKEAEQMLKNLQAVLAKEVTA
Ga0209297_10086548	3300027733	Freshwater Lake	MNEDMETALYTEQQVRISVDEWDDGGVWLALQGRNASMHATLTRAEAQRILKGLQEILAIEVTA
Ga0209297_11340291	3300027733	Freshwater Lake	TMNDIETTIYTRENVRISVDEWDDGGVWLGLQARGSSMHTTLTRTEAETMLKGLQAILAKEVTA
Ga0209087_10850984	3300027734	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSANMHTTLTRAEAEQMLKGLQAVLGAEVAA
Ga0209085_100028757	3300027741	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGAEVAA
Ga0209085_11342114	3300027741	Freshwater Lake	MNEIETTIYTEDSIRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMFNGLQAILSKEVAA
Ga0209085_11466492	3300027741	Freshwater Lake	MLEEIETIIYTEEQVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA
Ga0209085_11870312	3300027741	Freshwater Lake	MSEEIETIIYTKEHVRISVDQWDDGGVWLSLQARSASMHTTLTQAEAEQMLKGLQAVLSAEVAA
Ga0209189_10110637	3300027747	Freshwater Lake	MSEEIETIIYTEEQVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA
Ga0209084_100046235	3300027749	Freshwater Lake	MKKDIQVTICTDDDVRVSVDEWDNGSVWLHLQGRGASMNCTLTRPEAEQMLGALQAILAKEVTA
Ga0209084_11776545	3300027749	Freshwater Lake	MNDIETTIYTADNVRISVDEWDDGGVWLGLQGRGASMHAVLTRAEAEAMLKGLQAILAKEVTA
Ga0209084_12489023	3300027749	Freshwater Lake	MEINTIIHTEEQVRVSVDQYDEGGVWLSLQARGASMYAVLTRAEAEQMLAGLQAILAQEVVA
Ga0209084_13849772	3300027749	Freshwater Lake	MSQEIETIISTENGVRVSVSEWYDGCVWLSLINRGSSAYTSLTRAEADQLLAGLQAILSKEVST
Ga0209596_13898701	3300027754	Freshwater Lake	MSNDLQTTIYTDDKVRVSVDQWDDGGAWLSIARSGASMYTALTRAEAEQLLAGLQAIL
Ga0209296_100290613	3300027759	Freshwater Lake	MEINTIIHTEEQVRVSVDQYDEGVWLSLQARGASMYAVLTRAEAEQMLAGLQAILAQEVV
Ga0209088_1000022444	3300027763	Freshwater Lake	MNEEIQTVIFTEENVRISVDEYNEGVWLSLQGHGASMYTTLTIEEANQMLAGLQKVLNKEVTA
Ga0209400_10217686	3300027963	Freshwater Lake	MSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA
Ga0209401_10618925	3300027971	Freshwater Lake	PITKRKRIIMSEEIETIIYTEEQVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGVEVAA
Ga0247723_10047754	3300028025	Deep Subsurface Sediment	MNNEIETTIYTEEGVRISVDEWDEGGVWLSLRNNGASLYTTMTRADAEQLLAGLQKILSKEVTA
Ga0247723_10089827	3300028025	Deep Subsurface Sediment	MSDIETIIYTEDDVRISIDEWDDGGVWLGLQARGSHMHCTLTRKEAEQMLKNLQAVLAKEVTA
Ga0304728_10828331	3300028393	Freshwater Lake	METNTVIYTEEQVRISVDQYDDGGVWLGLQARGASMYAVLTRAEAEQVLAGLQAILSKEVAA
Ga0304730_12064802	3300028394	Freshwater Lake	MTNEIETTIYTEEGVRISVDEWDDGGVWLSIRNNGASLYTTMTRADAEQLLAGLQKILNKEVTA
Ga0302321_1015497533	3300031726	Fen	EINTTFYTEEKVRISIDEHSDGVWLSLQAMGASMYAVLTRAEAERMLEGLQAILEKDLA
Ga0315907_107016992	3300031758	Freshwater	MNNEIETTIYTEEGVRISVDEWDDGGVWLSLRNSGASLYTTMTRADAEQLLAGLQKILSKEVTV
Ga0315907_109753743	3300031758	Freshwater	MTNEIETTIYTEEGVRISVDEWDDGGVWLSLRNSGASLYTTMTRADAEQLLAGLQKILSKEVTA
Ga0315268_127208991	3300032173	Sediment	GPKENIMKKDIQITIHTDDDVRVSVDEWNDDCVWLHLQGRGASMHCTLTRTEAEQMLAGLQAILKKEVTV
Ga0334978_0560191_112_306	3300033979	Freshwater	MSKNIETTIYTEDNVRISVDEWDDGGVWLGLQGRGCSMHCTLTRAEAEQMLKNLQAVLAKEVTA
Ga0334986_0001109_15795_15989	3300034012	Freshwater	MSKNIETTIYTEDNVRISVDEWDDGGVWLGLQGRGCSMHCTLTRAEAEQMLKNLQAVLSKEVTA
Ga0335031_0226232_737_928	3300034104	Freshwater	MSDIETTIYTQAEVRISVDEWDDGGVWLGLQARGASMHATLTRKEAEQMLKNLQSILAKEVTA
Ga0335036_0203906_93_287	3300034106	Freshwater	MSKDIETTIYTEDEVRISVDEWDDGGVWLGLQGRGCSMHATLTRKEAEQMLKNLQAVLAKEVTA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters