Scaffold Ga0209084_1000186

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000186
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60159
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (59.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F007163	Metagenome / Metatranscriptome	356	Y
F038090	Metagenome / Metatranscriptome	166	Y
F056418	Metagenome	137	N
F060895	Metagenome / Metatranscriptome	132	Y
F083707	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100018610	F060895	N/A	MNTELERIVRAAGAPDEAMDQLWFVVFCQQFADLLIQELEADSVDTK
Ga0209084_100018612	F002869	GGAG	MTNEITTEMLDRKIAWCKQTLADNKASAIQRMQDFYFEKTRASVTESWPETFSSQELADALGVEQVRYRIYYSQDNLTCRLFVFRPHCTPFETETMSGMGFVPAQEGDADNIPDQPVEEVEE
Ga0209084_10001862	F038090	N/A	VDNPIKKLQENLARDLVSLEDTDMVSEQQLDKITDAYAQVYDIISKAVDKPRE
Ga0209084_100018622	F007163	GGAG	MTIEDLEHIFQNQIEEGTEKLYFMLKDGAAIPSIQRHPANELAGLLPMLDCFQYAGSGAGMPRFTK
Ga0209084_100018624	F083707	AGG	MSKEIELVPGGGRYYRAMTFHWVVVAVLIVPVAAALIVAILNPLWFRSAMFDWVERGVNQLSQWRNYQKYRIYLGTDPRMWHTLRGDLK
Ga0209084_100018673	F006099	N/A	MTSAKILYLARYRVPHAIMSLQPEFTKHLIGVDRTCIASPVPKDELWPVFEKYGIDTGNFDYAPDSEIYRLYPEVNNWVFSDDYRGWWLRQQAIKLSFLDYLDYDLMIMHDPDCIMIQDYQPIVDGKLNFMVLENERHSWGYYETIRNAFGFDRLTPHCFISEYVPVFKEDVTAMREFLEQKHKCNWLDALIENCPGEPTVPPWGKGELIRWLSEYELIGNWTMSRREIHMQPQRRYMYDDMTKIGGFDPDYHTAVCDAVPDLSRSVKFDWDTKKVVDFDRWMDLIRQKITTASGVTKVLAEDQCPGQPNVKWLRRSAEDDRHLTSKHGNNYLAYQHKQQ
Ga0209084_100018675	F004863	AGGA	MKLMVAGCSFSAVSQTLPGTAWSERLAEKLGGWELVNLARQGCSNGGIRIQMDEIRRQQPDFAVIGPTFWDRMEIPANSVPYDWTQAPSAGENPPLERHLQNRKLGNGYRREDGIRNVNYGREPSNMICETIFTLAENFEHPYRMGRITKQAQTGVRHWIDSIYDNAWKKQQDEWMIREGVITMFLDDIKFLVLPNLLWPFDPANTTLWRQAFPELVPDHYINLDESRSPQAICGNNPFRGEDPGYHSSAAGQEIIAENFYQHWLTHFK
Ga0209084_100018689	F056418	GGTGG	MRSESRSSLYYNAYEYAMTWQQDEIGCIRSLDQKKMLSHIRMRMDYEHSRNSLYKPYGENFESKFTTRCRDNLEGMRALLATETQPKKMVFFNNFLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKTQKARLATWVTTQGDDVSASKSLRTFLELDDRTNRVYWWRNDATESYYYIEHNSLQYETMLSMVCPGMVRKTLPIVKKQ