Metagenome / Metatranscriptome Family F060895

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060895
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	46 residues
Representative Sequence	MNTELERIVRAAGAPEEAMTELWFVVFCQQFADLLIAEMEGTDTQP
Number of Associated Samples	93
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	17.42 %
% of genes from short scaffolds (< 2000 bps)	78.79 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.818 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (21.212 % of family members)
Environment Ontology (ENVO)	Unclassified (64.394 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.05% β-sheet: 0.00% Coil/Unstructured: 45.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00487	FA_desaturase	6.82
PF02310	B12-binding	6.82
PF04055	Radical_SAM	5.30
PF13392	HNH_3	3.79
PF03401	TctC	1.52
PF02668	TauD	1.52
PF02585	PIG-L	0.76
PF13609	Porin_4	0.76
PF13671	AAA_33	0.76
PF03104	DNA_pol_B_exo1	0.76
PF00149	Metallophos	0.76
PF00581	Rhodanese	0.76
PF13640	2OG-FeII_Oxy_3	0.76
PF00155	Aminotran_1_2	0.76
PF03480	DctP	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	6.82
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	6.82
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.52
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.52
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	0.76
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
All Organisms	root	All Organisms	43.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
Viruses	superkingdom	All Organisms → Viruses	31.06 %
cellular organisms	root	All Organisms → cellular organisms	12.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	27.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	27.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	27.27 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.03 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	27.27 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.03 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	26.52 %
Puniceicoccales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.03 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.76 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	26.52 %
Puniceicoccaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.03 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.76 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	26.52 %
unclassified Puniceicoccaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.03 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.76 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	26.52 %
Puniceicoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.03 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.76 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035265000\|ErSWdraf_F5BXKTZ02J69Q2	Not Available	510	Open in IMG/M
3300000756\|JGI12421J11937_10145002	Not Available	593	Open in IMG/M
3300002408\|B570J29032_109221209	Not Available	641	Open in IMG/M
3300003388\|JGI25910J50241_10169403	Not Available	561	Open in IMG/M
3300004112\|Ga0065166_10101083	All Organisms → Viruses → Predicted Viral	1048	Open in IMG/M
3300004112\|Ga0065166_10467610	Not Available	532	Open in IMG/M
3300005525\|Ga0068877_10381094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	799	Open in IMG/M
3300005525\|Ga0068877_10717455	Not Available	534	Open in IMG/M
3300005527\|Ga0068876_10000023	Not Available	109033	Open in IMG/M
3300005527\|Ga0068876_10004845	Not Available	9387	Open in IMG/M
3300005581\|Ga0049081_10018881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2616	Open in IMG/M
3300005582\|Ga0049080_10079896	Not Available	1119	Open in IMG/M
3300005582\|Ga0049080_10224286	Not Available	617	Open in IMG/M
3300005662\|Ga0078894_10349042	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1340	Open in IMG/M
3300005662\|Ga0078894_10488670	All Organisms → Viruses → Predicted Viral	1106	Open in IMG/M
3300005662\|Ga0078894_10971596	Not Available	732	Open in IMG/M
3300005662\|Ga0078894_10973612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	732	Open in IMG/M
3300006484\|Ga0070744_10155346	Not Available	656	Open in IMG/M
3300006805\|Ga0075464_10514851	Not Available	733	Open in IMG/M
3300007544\|Ga0102861_1009610	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2296	Open in IMG/M
3300007562\|Ga0102915_1255992	Not Available	566	Open in IMG/M
3300007597\|Ga0102919_1077297	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1043	Open in IMG/M
3300007634\|Ga0102901_1100325	Not Available	828	Open in IMG/M
3300007639\|Ga0102865_1198908	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	598	Open in IMG/M
3300007992\|Ga0105748_10304972	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	676	Open in IMG/M
3300008055\|Ga0108970_11271498	Not Available	525	Open in IMG/M
3300008107\|Ga0114340_1079856	Not Available	1354	Open in IMG/M
3300008113\|Ga0114346_1007307	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7124	Open in IMG/M
3300008113\|Ga0114346_1065629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	1756	Open in IMG/M
3300008113\|Ga0114346_1317523	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	526	Open in IMG/M
3300008116\|Ga0114350_1006344	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9770	Open in IMG/M
3300008267\|Ga0114364_1017024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3114	Open in IMG/M
3300008267\|Ga0114364_1022149	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2620	Open in IMG/M
3300008267\|Ga0114364_1037577	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1836	Open in IMG/M
3300008267\|Ga0114364_1083750	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	1036	Open in IMG/M
3300008267\|Ga0114364_1177191	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	549	Open in IMG/M
3300008962\|Ga0104242_1029036	Not Available	948	Open in IMG/M
3300008996\|Ga0102831_1237452	Not Available	602	Open in IMG/M
3300008996\|Ga0102831_1292677	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	538	Open in IMG/M
3300009056\|Ga0102860_1028847	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1454	Open in IMG/M
3300009059\|Ga0102830_1221057	Not Available	553	Open in IMG/M
3300009068\|Ga0114973_10109104	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1567	Open in IMG/M
3300009151\|Ga0114962_10015808	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5424	Open in IMG/M
3300009155\|Ga0114968_10114081	Not Available	1637	Open in IMG/M
3300009158\|Ga0114977_10340066	Not Available	847	Open in IMG/M
3300009159\|Ga0114978_10003267	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13323	Open in IMG/M
3300009159\|Ga0114978_10381614	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	847	Open in IMG/M
3300009159\|Ga0114978_10386152	Not Available	841	Open in IMG/M
3300009161\|Ga0114966_10233568	Not Available	1145	Open in IMG/M
3300009181\|Ga0114969_10738117	Not Available	527	Open in IMG/M
3300009183\|Ga0114974_10097332	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1899	Open in IMG/M
3300009185\|Ga0114971_10207946	Not Available	1158	Open in IMG/M
3300010160\|Ga0114967_10159767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1244	Open in IMG/M
3300010312\|Ga0102883_1171076	Not Available	618	Open in IMG/M
3300010354\|Ga0129333_10502583	Not Available	1062	Open in IMG/M
3300011010\|Ga0139557_1017292	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1346	Open in IMG/M
3300011010\|Ga0139557_1055614	Not Available	669	Open in IMG/M
3300011336\|Ga0153703_1114	Not Available	29369	Open in IMG/M
3300013372\|Ga0177922_10151085	Not Available	734	Open in IMG/M
3300014819\|Ga0119954_1000854	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10531	Open in IMG/M
3300016791\|Ga0182095_1203696	Not Available	625	Open in IMG/M
3300016797\|Ga0182090_1014258	Not Available	646	Open in IMG/M
3300017722\|Ga0181347_1165868	Not Available	596	Open in IMG/M
3300017747\|Ga0181352_1168827	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	572	Open in IMG/M
3300017754\|Ga0181344_1056785	Not Available	1162	Open in IMG/M
3300017754\|Ga0181344_1175391	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	607	Open in IMG/M
3300017754\|Ga0181344_1224117	Not Available	524	Open in IMG/M
3300017766\|Ga0181343_1006936	All Organisms → cellular organisms → Bacteria	3807	Open in IMG/M
3300017766\|Ga0181343_1053184	All Organisms → Viruses → Predicted Viral	1188	Open in IMG/M
3300017766\|Ga0181343_1204542	Not Available	540	Open in IMG/M
3300017778\|Ga0181349_1020701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2688	Open in IMG/M
3300017778\|Ga0181349_1258730	Not Available	578	Open in IMG/M
3300017780\|Ga0181346_1099668	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1129	Open in IMG/M
3300019784\|Ga0181359_1020699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2490	Open in IMG/M
3300020141\|Ga0211732_1383649	Not Available	969	Open in IMG/M
3300020151\|Ga0211736_10271888	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1651	Open in IMG/M
3300020159\|Ga0211734_10768918	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7616	Open in IMG/M
3300020159\|Ga0211734_10769174	Not Available	859	Open in IMG/M
3300020159\|Ga0211734_10781625	Not Available	508	Open in IMG/M
3300020160\|Ga0211733_10369634	Not Available	3385	Open in IMG/M
3300020160\|Ga0211733_10470477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	2074	Open in IMG/M
3300020161\|Ga0211726_10265067	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4341	Open in IMG/M
3300020161\|Ga0211726_10634499	Not Available	663	Open in IMG/M
3300020161\|Ga0211726_11078861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1167	Open in IMG/M
3300020162\|Ga0211735_11488944	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2058	Open in IMG/M
3300020172\|Ga0211729_10196831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	577	Open in IMG/M
3300020172\|Ga0211729_10357512	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	1169	Open in IMG/M
3300020172\|Ga0211729_11254212	Not Available	534	Open in IMG/M
3300020205\|Ga0211731_10558605	Not Available	510	Open in IMG/M
3300020527\|Ga0208232_1005885	All Organisms → Viruses → Predicted Viral	2012	Open in IMG/M
3300020571\|Ga0208723_1018709	Not Available	1093	Open in IMG/M
3300021519\|Ga0194048_10043191	Not Available	1845	Open in IMG/M
3300021519\|Ga0194048_10097420	All Organisms → Viruses → Predicted Viral	1135	Open in IMG/M
3300021961\|Ga0222714_10641068	Not Available	525	Open in IMG/M
3300021962\|Ga0222713_10441616	Not Available	791	Open in IMG/M
3300021963\|Ga0222712_10673579	Not Available	587	Open in IMG/M
3300022407\|Ga0181351_1007550	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4295	Open in IMG/M
3300022407\|Ga0181351_1225507	Not Available	604	Open in IMG/M
3300022752\|Ga0214917_10289457	Not Available	736	Open in IMG/M
3300023174\|Ga0214921_10020363	Not Available	7110	Open in IMG/M
3300023174\|Ga0214921_10134104	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1735	Open in IMG/M
3300023174\|Ga0214921_10151506	Not Available	1571	Open in IMG/M
3300023174\|Ga0214921_10178922	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1371	Open in IMG/M
3300023174\|Ga0214921_10201760	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1241	Open in IMG/M
3300023184\|Ga0214919_10046036	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4245	Open in IMG/M
3300024346\|Ga0244775_10132830	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2106	Open in IMG/M
3300024346\|Ga0244775_10170594	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1832	Open in IMG/M
3300024346\|Ga0244775_10635655	Not Available	864	Open in IMG/M
3300024348\|Ga0244776_10747481	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	598	Open in IMG/M
3300027205\|Ga0208926_1025407	Not Available	891	Open in IMG/M
3300027529\|Ga0255077_1040818	Not Available	858	Open in IMG/M
3300027608\|Ga0208974_1051013	Not Available	1189	Open in IMG/M
3300027608\|Ga0208974_1078594	Not Available	905	Open in IMG/M
3300027621\|Ga0208951_1078830	Not Available	922	Open in IMG/M
3300027697\|Ga0209033_1049072	Not Available	1526	Open in IMG/M
3300027736\|Ga0209190_1005545	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8052	Open in IMG/M
3300027746\|Ga0209597_1281179	Not Available	645	Open in IMG/M
3300027749\|Ga0209084_1000186	Not Available	60159	Open in IMG/M
3300027759\|Ga0209296_1237906	Not Available	756	Open in IMG/M
3300027769\|Ga0209770_10270007	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	655	Open in IMG/M
3300027782\|Ga0209500_10060975	Not Available	1976	Open in IMG/M
3300027793\|Ga0209972_10184398	Not Available	977	Open in IMG/M
3300027797\|Ga0209107_10330306	Not Available	710	Open in IMG/M
3300027797\|Ga0209107_10436601	Not Available	591	Open in IMG/M
3300031951\|Ga0315904_10749506	Not Available	812	Open in IMG/M
3300033992\|Ga0334992_0048269	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium	2437	Open in IMG/M
3300033994\|Ga0334996_0201173	Not Available	1064	Open in IMG/M
3300034060\|Ga0334983_0770904	Not Available	505	Open in IMG/M
3300034102\|Ga0335029_0376470	Not Available	866	Open in IMG/M
3300034103\|Ga0335030_0132424	Not Available	1791	Open in IMG/M
3300034104\|Ga0335031_0784994	Not Available	535	Open in IMG/M
3300034280\|Ga0334997_0307916	Not Available	1021	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.24%
Host-Associated	Host-Associated	0.76%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.24%
Plants	Host-Associated → Plants	0.76%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	81.06%
Marine	Environmental → Aquatic → Marine	18.18%
Leaf	Host-Associated → Plants → Leaf	0.76%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	46.21%
Lentic	Environmental → Aquatic → Freshwater → Lentic	31.06%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.61%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.30%
Coastal	Environmental → Aquatic → Marine → Coastal	2.27%
Ice	Environmental → Aquatic → Freshwater → Ice	1.52%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.76%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.76%
River	Environmental → Aquatic → Freshwater → River	0.76%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	46.21%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	27.27%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	9.09%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.30%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.27%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.27%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.52%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.76%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.76%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	21.21%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.64%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	12.88%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.61%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	9.09%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	7.58%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	4.55%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.03%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	2.27%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.27%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.52%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.52%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.52%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	1.52%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.52%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.76%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.76%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.76%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.76%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.76%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.76%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035265000	Freshwater microbial communities from Swedish Lakes - surface of Lake Erken	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007562	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02	Environmental	Open in IMG/M
3300007597	Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02	Environmental	Open in IMG/M
3300007634	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02	Environmental	Open in IMG/M
3300007639	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008962	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5	Environmental	Open in IMG/M
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental	Open in IMG/M
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental	Open in IMG/M
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010312	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental	Open in IMG/M
3300011336	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014819	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A	Environmental	Open in IMG/M
3300016791	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016797	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041408BS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020527	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020571	Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021519	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300027205	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)	Environmental	Open in IMG/M
3300027529	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027621	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)	Environmental	Open in IMG/M
3300027697	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027746	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300033992	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034060	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016	Environmental	Open in IMG/M
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034280	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ErSWdraft_2588610	2035265000	Freshwater	MNTELERIVRAAGAPEEVMGQLWFAVFCQQFAHLLIAELETEIVDTK
JGI12421J11937_101450022	3300000756	Freshwater And Sediment	MNTELERIVRAAGAPEQAMAELWFVVFCQQFANLLIQELEADSVNTKL*
B570J29032_1092212091	3300002408	Freshwater	MNTELERIVRAAGAPEQAMAELWFVVFCQQFADLLIAEMEGTDSQS*
JGI25910J50241_101694031	3300003388	Freshwater Lake	MNTELERLARAAGAPEEIMTELWFAIFCQQFAHLLIQELEVDSVDTK*
Ga0065166_101010832	3300004112	Freshwater Lake	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFAHLLIAEMEGTDSRP*
Ga0065166_104676102	3300004112	Freshwater Lake	VAMNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIQEMEGPDSQP*
Ga0068877_103810942	3300005525	Freshwater Lake	FQAMNTELERLVRAAGAPEEAMDQLWFAIFCQQFADLLITEMEMDQEADLLQVDA*
Ga0068877_107174551	3300005525	Freshwater Lake	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGT
Ga0068876_1000002310	3300005527	Freshwater Lake	MNTELERLVRAAGAPEEAMDQLWFAIFCQQFADLLITEMEMDQEADLLQVDA*
Ga0068876_100048451	3300005527	Freshwater Lake	MNTELERIVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEGTDTQP*
Ga0049081_100188811	3300005581	Freshwater Lentic	RAAGAPEEVMTELWFSVFCQQFADLLIAEMEGTNSQP*
Ga0049080_100798962	3300005582	Freshwater Lentic	VNTELERIVRAAGAPEEVMTELWFSVFCQQFADLLIAEMEGTNSQP*
Ga0049080_102242862	3300005582	Freshwater Lentic	MNTELERLARAAGAPEEIMTELWFVVFCQQFADLLISEMEADSVDTK*
Ga0078894_103490425	3300005662	Freshwater Lake	VNAELERLVRAAGAPEEVMTELWFAVFCKQFAHLLIQEMEG*
Ga0078894_104886705	3300005662	Freshwater Lake	MNTELERIVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEG*
Ga0078894_109715962	3300005662	Freshwater Lake	MNTELERIVRAAGAPEEAMTELWFVVFCQQFADLLIAEMEGPDSRP*
Ga0078894_109736122	3300005662	Freshwater Lake	MNTELERIVRAAGAPEEVMDQLWFAVFCQQFADLLISEMEIDQEDDLRQVDA*
Ga0070744_101553461	3300006484	Estuarine	MNTELERIMRAAGAPEEVMTELWFVVFCQQFADLLISEMEG*
Ga0075464_105148512	3300006805	Aqueous	MNTELERIVRAAGAPEEVMDQLWFAVFCQQFAHLLISEIEGTDSQP*
Ga0102861_10096108	3300007544	Estuarine	MNAELERIVRAAGAPDEAMEQLWFVVFCQQFADLLIAEMEG*
Ga0102915_12559921	3300007562	Estuarine	MNAELERLVREAGAPEEVMDQLWFVVFCQQFADLLISEIEGTDPQS*
Ga0102919_10772976	3300007597	Estuarine	AMNTELERIMRAAGAPEEVMTELWFVVFCQQFADLLISEMEG*
Ga0102901_11003252	3300007634	Estuarine	VNTELERLVRAAGAPEEVMTELWFAIFCQQFADLLIAEMEG*
Ga0102865_11989081	3300007639	Estuarine	NAELERIVRAAGAPDEAMEQLWFVVFCQQFADLLIAEMEG*
Ga0105748_103049722	3300007992	Estuary Water	MNTELERIVRAAGAPEEVMDQLWFVVFCQQFADLLIAEMEG*
Ga0108970_112714983	3300008055	Estuary	MNTELERIVRAAGAPEEAMAELWFVVFCQQFADLLIAEIEMDQEA
Ga0114340_10798566	3300008107	Freshwater, Plankton	MNTELERIVRAAGAPEQAMAELWFVVFCQQFADLLIAEMEGTDTQP*
Ga0114346_100730711	3300008113	Freshwater, Plankton	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGPDSRP*
Ga0114346_10656292	3300008113	Freshwater, Plankton	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEMDQEADLLQVDA*
Ga0114346_13175232	3300008113	Freshwater, Plankton	MAMNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIQELEG*
Ga0114350_10063446	3300008116	Freshwater, Plankton	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGTDTQP*
Ga0114364_10170244	3300008267	Freshwater, Plankton	MNTELERLARAAGAPEEAMTELWFVVFCQQFADLLIQELEGTDTQP*
Ga0114364_10221496	3300008267	Freshwater, Plankton	VNAELERLVRAAGAPEEVMTELWFVVFCQQFADLLIAELEG*
Ga0114364_10375776	3300008267	Freshwater, Plankton	MNTELERIVRAAGAPEEAMTELWFSVFCQQFADLLIAEMEG*
Ga0114364_10837501	3300008267	Freshwater, Plankton	MNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIAEMEMDQEADLLQVDA*
Ga0114364_11771911	3300008267	Freshwater, Plankton	MNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIQELEG*
Ga0104242_10290363	3300008962	Freshwater	MNTELERIVRAAGAPEEAMAELWFVVFCQQFADLLISEMEIDQEDDLRQVDA*
Ga0102831_12374522	3300008996	Estuarine	MNTELERLVRAAGAPEEVMDQLWFVVFCQQFADLLISEIEGTDPQS*
Ga0102831_12926771	3300008996	Estuarine	MAMNTELERIVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEG*
Ga0102860_10288475	3300009056	Estuarine	MNTELERIVRAAGAPDEAMEQLWFVVFCQQFADLLIAEMEG*
Ga0102830_12210572	3300009059	Estuarine	MNTELERLVRAAGAPEEVMTELWFAIFCQQFADLLIAEMEG*
Ga0114973_101091043	3300009068	Freshwater Lake	MNAELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGPDSRP*
Ga0114962_100158084	3300009151	Freshwater Lake	MNTELERIVRAAGAPDEAMDQLWFVVFCQQFADLLIQELEADSVDTK*
Ga0114968_101140814	3300009155	Freshwater Lake	MNTELERIVRASGAPEEAMNQLWFVVFCQQFADLLIAELEAEIVDTK*
Ga0114977_103400661	3300009158	Freshwater Lake	VNAELDRLVRAAGAPEEVMTELWFVVFCQQFADLLISEMEADSVDTK*
Ga0114978_100032674	3300009159	Freshwater Lake	VNAELERLVRAAGAPEEAMAELWFVVFCQQFADLLISEMEGSDSRP*
Ga0114978_103816141	3300009159	Freshwater Lake	VNTELERIVRASGAPEEAMAELWFVVFCQQFADLLIAEMEADSVDTK*
Ga0114978_103861522	3300009159	Freshwater Lake	MNTELERLVRAAGAPEEAMAELWFVVFCQQFADLLIAEMEANSVDT
Ga0114966_102335684	3300009161	Freshwater Lake	VNAELERIVRAAGAPEEVMTELWFAVFCQQFAHLLITELEAEIVDTK*
Ga0114969_107381172	3300009181	Freshwater Lake	MNAELERIVRAAGAPEQAMDQLWFVVFCQQFADLLITEMEGTDSQP*
Ga0114974_100973322	3300009183	Freshwater Lake	MNTELERIVRAAGAPEEAMDELWFVVFCQQFADLLIAEMEGPDSRP*
Ga0114971_102079461	3300009185	Freshwater Lake	VNTELERLVRAAGAPEEVMTELWFAVFCQQFAHLLITELEAEIV
Ga0114967_101597675	3300010160	Freshwater Lake	MNTELERIVRASGAPEEAMNQLWFVVFCQQFADLLIAELE
Ga0102883_11710763	3300010312	Estuarine	MNTELERIVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEGPDRRP*
Ga0129333_105025833	3300010354	Freshwater To Marine Saline Gradient	MNTELERIVRAAGAPEEAMDQLWFVVFCQQFAHLLIAEMEMDQEADLLQVDA*
Ga0139557_10172923	3300011010	Freshwater	MNTELERLARAAGAPEEIMTELWFAIFCQQFAHLLIQELEG*
Ga0139557_10556141	3300011010	Freshwater	MNTELERIVRAAGAPEQAMAELWFVVFCQQFAQLLIAEMEMD
Ga0153703_11148	3300011336	Freshwater	MNAELERLVRAAGAPEEVMTELWFAIFCQQFADLLIAEMEG*
Ga0177922_101510852	3300013372	Freshwater	MNTELERIVRAAGAPEEVMTELWFSVFCQQFADLLIAEMEGTNSQP*
Ga0119954_10008549	3300014819	Freshwater	MNAELERIVRAAGAPEQAMDQLWFVVFCQQFANLLIQELEADSVDTK*
Ga0182095_12036962	3300016791	Salt Marsh	MNTELERIVRAAGAPEEAMDQLWFMVFCQQFADLLIRELEGTDSQP
Ga0182090_10142581	3300016797	Salt Marsh	MNTELERIVRAAGAPEEAMDQLWFVVFCQQFADLLIRELEGTDSQP
Ga0181347_11658683	3300017722	Freshwater Lake	MNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLL
Ga0181352_11688271	3300017747	Freshwater Lake	LERIVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEGXQTLRIFV
Ga0181344_10567851	3300017754	Freshwater Lake	MNTELERIVRAAGAPEEAMDQLWFVVFCQQFAHLLIS
Ga0181344_11753913	3300017754	Freshwater Lake	ELESIVRAAGAPEEAMDQLWFVVFCQQFADLLIQELEGXQTLGKII
Ga0181344_12241172	3300017754	Freshwater Lake	ERIVRAAGAPEQAMTELWFVVFCQQFAHLLIAEMEGADPSHK
Ga0181343_10069364	3300017766	Freshwater Lake	MNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIAEIEMDQEADLLQVDA
Ga0181343_10531842	3300017766	Freshwater Lake	AGAPEEVMTELWFVVFCQQFADLLIAEMEGTDTQP
Ga0181343_12045421	3300017766	Freshwater Lake	MNTELERIVRAAGAPEEAMDQLWFAIFCQQFADLLIQELEANSVDTK
Ga0181349_10207011	3300017778	Freshwater Lake	MNTELERLVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEGTNSQP
Ga0181349_12587303	3300017778	Freshwater Lake	MNTELERIVRAAGAPEEAMTELWFVVFCQQFADLLISEMEADSV
Ga0181346_10996686	3300017780	Freshwater Lake	TELERIVRAAGAPEEIMTELWFAIFCQQFADLLISEMEGXQTLRIFV
Ga0181359_10206992	3300019784	Freshwater Lake	MNTELERLARAAGAPEEAMTELWFVVFCQQFADLLIQELEGTDTQP
Ga0211732_13836492	3300020141	Freshwater	MNTELERLVRAAGAPEEVMTELWFVVFCQQFAHLLITEMEIDQEADLLQVDA
Ga0211736_102718885	3300020151	Freshwater	MNTELERLVRAAGAPEEVMTELWFVVFCQQFADLLITKMEGTDPQP
Ga0211734_107689182	3300020159	Freshwater	MNAELERIVRAAGAPEEAMDQLWFVVFCQQFAHLLIAELETEIVDTK
Ga0211734_107691742	3300020159	Freshwater	MNTELERLARSAGAPEEIMDQLWFAVFCQQFAHLLIAEMEGTDPSHK
Ga0211734_107816252	3300020159	Freshwater	MNTELERIVRAAGAPEEVMTELWFAVFCQQFAHLLIAELEAEIVDTK
Ga0211733_103696341	3300020160	Freshwater	MNTELECLVRAAGAPEEVMTELWFAIFCQQFAHLLITEMEGTDTQP
Ga0211733_104704773	3300020160	Freshwater	MNTELERLVRAAGAPEEVMTELWFAIFCQQFAHLLIIEMEMDQEADPLQVDA
Ga0211726_102650672	3300020161	Freshwater	MNTELERLVRAAGAPEEVMTELWFAIFCQQFAHLLITTMEMDQEADLLQVDA
Ga0211726_106344991	3300020161	Freshwater	MNTELERIVRAAGAPEEVMTELWFVVFCQQFAHLLIAEMEG
Ga0211726_110788611	3300020161	Freshwater	MNTELERIVRAAGAPEEIMDQLWFAVFCQQFAHLLIAEMEGTDPSHK
Ga0211735_114889442	3300020162	Freshwater	MNTELERLVRAAGAPEEVMTELWFAIFCQQFAHLLITEMEGTDTQP
Ga0211729_101968312	3300020172	Freshwater	MNTELERLVRAAGAPEEVMTELWFVVFCQQFAHLLIAEMEMDQEAGLLQVDA
Ga0211729_103575122	3300020172	Freshwater	MNIELERLVRAAGAPEEVMTELWFAIFCQQFAHLLIIEMEMDQEADPLQVDA
Ga0211729_112542122	3300020172	Freshwater	MNTELERIVRAAGAPEEIMSQLWFAVFCQQFAHLLIAELETEIVDTK
Ga0211731_105586052	3300020205	Freshwater	MNTELERIVRAAGAPEEIMTELWFVVFCQQFADLLIAELETEIVDTK
Ga0208232_10058854	3300020527	Freshwater	MNTELERIVRAAGAPEEAMAELWFVVFCQQFADLLIAEMEMDQEADLLQVDA
Ga0208723_10187094	3300020571	Freshwater	MNTELERIVRAAGAPEQAMTELWFVVFCQQFADLLISEMEMDQEADLLQVDA
Ga0194048_100431914	3300021519	Anoxic Zone Freshwater	VNAELERIVRAAGAPEEVMTELWFAVFCQQFAHLLITELEAEIVDTK
Ga0194048_100974202	3300021519	Anoxic Zone Freshwater	MNTELERIVRAAGAPEEAMTELWFVVFCQQFADLLIAEMEGTDTQP
Ga0222714_106410681	3300021961	Estuarine Water	VIVNAELERLVRAAGAPEEVMTELWFAVFCQQFAHLLITEMEGTDSQS
Ga0222713_104416161	3300021962	Estuarine Water	VNTELERLVRAAGAPEEVMDQLWFAVFCQQFAHLLITEMEGTDSQS
Ga0222712_106735792	3300021963	Estuarine Water	MNTELERIVRAAGAPEEAMDQLWFVVFCQQFADLLIAEMEGPDSRP
Ga0181351_10075501	3300022407	Freshwater Lake	VNTELERLARAAGAPEEIMTELWFAIFCQQFAHLLIQELEVDSVDTK
Ga0181351_12255073	3300022407	Freshwater Lake	MNTELERIVRAAGAPEEIMTELWFAIFCQQFADLLISEMEG
Ga0214917_102894572	3300022752	Freshwater	MNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIQEMEG
Ga0214921_100203639	3300023174	Freshwater	MNTELERIVRAAGAPEEAMAELWFVVFCQQFADLLISEMEIDQEDDLRQVDA
Ga0214921_101341044	3300023174	Freshwater	MNAELERIVRAAGAPEEAMTELWFVVFCQQFADLLITELEAEIVDTK
Ga0214921_101515064	3300023174	Freshwater	MNAELERIVRAAGAPEQAMDQLWFVVFCQQFANLLIQELEADSVDTK
Ga0214921_101789223	3300023174	Freshwater	MNTELERIVRAAGAPEEVMTELWFVIFCQQFADLLIAEMEG
Ga0214921_102017604	3300023174	Freshwater	MNTELERIVRASGAPEEAMNQLWFVVFCQQFADLLITELEAEIVDTK
Ga0214919_100460366	3300023184	Freshwater	MNTELERIVRAAGAPEEAMAELWFVVFCQQFADLLISEMEGASSQS
Ga0244775_101328302	3300024346	Estuarine	MNTELERLVRAAGAPEEVMTELWFAIFCQQFADLLIAEMEG
Ga0244775_101705942	3300024346	Estuarine	MNTELERIMRAAGAPEEVMTELWFVVFCQQFADLLISEMEG
Ga0244775_106356551	3300024346	Estuarine	IELERLVRAAGAPEEVMDQLWFVVFCQQFADLLISEIEGTDPQS
Ga0244776_107474812	3300024348	Estuarine	MNTELERIVRAAGVPEEVMTELWFVVFCQQFADLLIAEMEMNQEAVPLQVDA
Ga0208926_10254072	3300027205	Estuarine	MNAELERIVRAAGAPDEAMEQLWFVVFCQQFADLLIAEMEG
Ga0255077_10408183	3300027529	Freshwater	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGTDTQP
Ga0208974_10510131	3300027608	Freshwater Lentic	MNTELERIVRAAGAPEEAMTELWFVVFCQQFADLLISEMEAD
Ga0208974_10785945	3300027608	Freshwater Lentic	MNTELERLARAAGAPEEIMTELWFVVFCQQFADLLISEMEADSVDTK
Ga0208951_10788303	3300027621	Freshwater Lentic	MNTELERLARAAGAPEEIMTELWFAIFCQQFAHLLIQELEVDSVDTK
Ga0209033_10490722	3300027697	Freshwater Lake	MNTELERIVRAAGAPEEAMTELWFVVFCQQFAHLLIAEMEGTDSRP
Ga0209190_100554513	3300027736	Freshwater Lake	MNAELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGPDSRP
Ga0209597_12811791	3300027746	Freshwater Lake	MNTELERIVRASGAPEEAMNQLWFVVFCQQFADLLIAELEAEIVDTK
Ga0209084_100018610	3300027749	Freshwater Lake	MNTELERIVRAAGAPDEAMDQLWFVVFCQQFADLLIQELEADSVDTK
Ga0209296_12379062	3300027759	Freshwater Lake	MNTELERIVRAAGAPEEAMDELWFVVFCQQFADLLIAEMEGPDSRP
Ga0209770_102700071	3300027769	Freshwater Lake	VNAELERLVRAAGAPEEVMTELWFAVFCKQFAHLLIQEMEG
Ga0209500_100609752	3300027782	Freshwater Lake	VNAELERLVRAAGAPEEAMAELWFVVFCQQFADLLISEMEGSDSRP
Ga0209972_101843982	3300027793	Freshwater Lake	MNTELERIVRAAGAPEEVMTELWFVVFCQQFADLLIAEMEGTDTQP
Ga0209107_103303062	3300027797	Freshwater And Sediment	MNTELERIVRAAGAPEQAMAELWFVVFCQQFANLLIQELEADSVNTKL
Ga0209107_104366012	3300027797	Freshwater And Sediment	MNTELERIVRAAGAPEEAMTELWFVVFCQQFADLLISEMEADSVDTK
Ga0315904_107495061	3300031951	Freshwater	MNTELERIVRAAGAPEQAMDQLWFVVFCQQFADLLIAEMEGPDSRP
Ga0334992_0048269_1144_1302	3300033992	Freshwater	MNTELERIVRAAGAPEQAMAELWFVVFCQQFADLLISEMEMDQEADLLQVDA
Ga0334996_0201173_405_548	3300033994	Freshwater	MNTELERIVRAAGAPEEVMTELWFSVFCQQFADLLIAEMEADSVDTK
Ga0334983_0770904_371_505	3300034060	Freshwater	MNTELERIVRAAGAPEQAMAELWFVVFCQQFADLLISEMEMDQEA
Ga0335029_0376470_44_202	3300034102	Freshwater	MNTELERLARAAGAPEEIMTELWFAIFCQQFAHLLIAEMEMDQEADLLQVDA
Ga0335030_0132424_1156_1296	3300034103	Freshwater	MNTELERIVRAAGAPKEAMTELWFVVFCQQFADLLIAEMEGTDTQP
Ga0335031_0784994_350_490	3300034104	Freshwater	MNTELERIVRAAGAPEQAMAELWFVVFCQQFADLLIAEMEGTDTQP
Ga0334997_0307916_200_340	3300034280	Freshwater	MNTKLERIVRAAGAPEQAMAELWFVVFCQQFADLLIAEMEGTDSQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060895

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences