NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1000599

Scaffold Ga0209597_1000599


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000599 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23836
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045745Metagenome152Y
F072346Metagenome121Y
F081033Metagenome / Metatranscriptome114N
F090067Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100059926F045745N/AMKRKLIYGTALALICYAYYCALKNNQTIQKNNEPNWVFGISESEDIYTDTIDLRLYTSHGRLKYNSNEQ
Ga0209597_100059931F072346AGCAGLKDNHLSAVKWITMRIQRPTIQLVIDCATYHDLNYSLEINLNRIKMESGASYPAYRQTKKIKDYLELHKI
Ga0209597_100059942F090067N/AMPRLPKDIDQERLLEWADEYIDYCLNSTKEVATGAGVKIIRERHLPTISFFLLIWLPRQGFEFYSRATYYEVLNREDHPCYKITKQIDELFRALAADVVANEGKGIFYAKNLLGWTDRAKNEEKQEVIISFANEHSTPETTQEPS
Ga0209597_10005998F081033N/AMIVFIEPVKGVREIADRVEIKVVNYALQNPEQTLYFKLMSQFNPMIEEGNLIIPEPIVAQWGIDDSFIVKWALETLGLKEKVITPIEEEVAPEIEGE

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