NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209597_1000588

Scaffold Ga0209597_1000588


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000588 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24085
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F004950Metagenome417Y
F006019Metagenome / Metatranscriptome383Y
F012116Metagenome283Y
F068573Metagenome124Y
F071000Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100058814F006019GGAMTFITENNIANLYSALIEFPVFDEYKLPPSAKVDFVIVNDPEMYGQYEPPEQGEPHIITISTAKCSHLDTVMKTLCHEIIHMCIYLETPKTEKYTSHKGLFLKLQKRVANHLGFDPKEL
Ga0209597_100058816F071000N/AMIVLNFMNFVGLSFLKLIVVSLLFIAMGFSLAFMMAMEALTNALEYINSYVD
Ga0209597_100058824F068573GGAGGVDYKPLTQEQIIGAYSKVFPTRYEPMTIERMVRFARIIEQLHGVKYET
Ga0209597_100058825F012116AGGAMKPIAWLVEEFDGTGTLVWSGLMSSEPTEMSWFKDLKSKLHNVTITPLIADTKNIIKITNAKKYDSKKLTEANSGL
Ga0209597_100058842F004950GGAGLGKGSTRRPLLISEQEAENNWNKIFKKDYEIEKRFIDGVSKPNESQFDGDKPNAVKS
Ga0209597_10005887F001848N/AMILHYIPKQDLRQHWDYVKHGLELVRAKGHPHWIVEDVYCDCYENRSMLFLAINNKQPYGFVVLQPMGQTMHVWAAWSTINDEVLFQQSWQEIQQIAKQGGKTEVTFTSSRKGWERKVKQMNFKPTTWTFTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.