Scaffold Ga0209597_1000225

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000225
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37691
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (65.57%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F019102	Metagenome	231	Y
F023833	Metagenome	208	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F027777	Metagenome / Metatranscriptome	193	N
F030060	Metagenome	186	N
F048161	Metagenome	148	N
F074559	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100022518	F003049	AGGGGG	MKNAKQIIGCRKAKKGEDTKGLGMIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK
Ga0209597_100022520	F030060	N/A	MTKGIITSESPEIHWEHLNVAGGRVLDLGCAFWTESERQEANGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLEEFMAWFDSIGFECYRHDSISFCPEISVIYGRLKC
Ga0209597_100022522	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFIYSHPEIKEADKTNIVLDKLDDKPAEGLPESYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPADIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRKDKQTGFFPQKNEWETDNIFDFEGLTRMD
Ga0209597_100022525	F009142	N/A	MNNSVQINVEDALDNLLANIPSLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVSIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRFLDFHEKRNSMYVGVI
Ga0209597_10002253	F007164	AGGA	MSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLEAIQDIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSPTQWTPAQRTQFVEEARPIVEAFKEAGGEL
Ga0209597_100022530	F006138	GAGG	MAAVTIGTQGLSFGLVGEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALSALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0209597_100022531	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVALRVVQTKGGQTLLISENATSEQRRAILKHL
Ga0209597_100022532	F019102	N/A	MSISLDEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDSDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPAPHQAEPGNA
Ga0209597_100022533	F025225	N/A	MITVELLNQARFVHKLQEYQKASKKNMADVINQKLGDVAVTAIGTTYRTNAAQIASELQRVEGQVVTKKVFKPFGLTKSGKVKKRKIGEYAVRYKAKSVSYVGTYKLVNWLLKNRGLATLGKTKEGVGGLGMGGGKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAGLTRGDYSPEAIKRLGGGSKADSKKAQMEGIIFNRAGDLDTRYYPVRKRAISGAVKVGMPGLKMAIDKVMKDMNVYLARKNKEASDKLKL
Ga0209597_100022544	F074559	AGG	MKAQNPWQKLLSEHIKDKFAPPPPAGYHTREEVSKLWGKSMNTTSRMLSQMLLEKKVDMKRHPFIIPRKDHRVVRNLKIYKILPAKHPHK
Ga0209597_100022546	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPAWQKQRIRW
Ga0209597_100022547	F005702	GGA	VIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKEPKEPKLLLPSKNWVGRN
Ga0209597_100022549	F027777	AGGA	MSEELPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQKKK
Ga0209597_100022551	F023833	AGGA	MKSHSELIQDILNDVRSKAADLERERCANLVQQLADGTEDAVITGILNEVVVAIRRLADVSR
Ga0209597_100022555	F010463	AGGCGG	VNDLVLAATIHRVKCCEDKIAQFEQLISTLTAQMAHNRSELASKGLASLVMGTTTPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSTGRGIK
Ga0209597_10002257	F008938	GGA	MIRQKELCEKWGLTRGAISQLVKAGMPLTSVVDAERWKIANQKKPSRARPILSASANLSETSENSDAESIKLGNPLGRLHRARRAELVAYSLVQRAANEKNPVAMRAAVQGWGEAKKRVAEAEMEHARWEEVSRVTVRMGEVQEWITKWHGAIRSLLDALPSSLAARANPSDPECAKQAIQDGINQIFVTIQKAEGAFK
Ga0209597_10002258	F048161	AGGGGG	MILGLKIGVGIVLGIVLLNVAFWTCIILAYLLATLFECIGKWINK