NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209597_1000171

Scaffold Ga0209597_1000171


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000171 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42419
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F000652Metagenome / Metatranscriptome959Y
F004924Metagenome / Metatranscriptome418Y
F005705Metagenome / Metatranscriptome392Y
F013757Metagenome / Metatranscriptome268Y
F072092Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100017115F013757AGGAMLTQCIAKAKLVFNKNLKTYKLVVAFNAHKQFKKDKWGNEKIVYAFPTQAKCAYVSGDISAKTLQADLAKMLPTVYSTLRTNSVEFVE
Ga0209597_100017118F004924AGGAGMRDAILAKLAEVEEMLAEATCDGQQLAELNCFADVEGALSTLVQAVDYYVD
Ga0209597_100017123F000652AGGAGGMKKVIVRTELYQELEVPDSWDRYDVYDFLAEHQSFRTAFQGVSNEDQTARIIDLGITTETVTEMGEETFDE
Ga0209597_100017125F005705AGGAGMKIVVKIPHKTRAHIVLFCANTPFKQKVVASKIKFKRQPKHKGRDNG
Ga0209597_100017134F072092GAGMNWQQYEVWSEDDLGHQEIVDTTASKKEALALAQRVHNETKAYVTVYQETSDGDYEMIKEFK
Ga0209597_100017145F000354GAGMTTINYDRFASFDINECCDHFDSEKQSNWKKINKFIVADGQEYAHIMESEFDFEDTGDGEYEAFQAGVKYALTKMNIAFEAAAIDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPVMMVDSWV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.