NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209597_1000008

Scaffold Ga0209597_1000008


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116631
Total Scaffold Genes217 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)135 (62.21%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Associated Families16

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F006506Metagenome / Metatranscriptome371Y
F009605Metagenome / Metatranscriptome315Y
F009749Metagenome / Metatranscriptome313Y
F010472Metagenome303Y
F011276Metagenome292Y
F015470Metagenome254N
F018911Metagenome / Metatranscriptome232Y
F019831Metagenome / Metatranscriptome227Y
F021767Metagenome / Metatranscriptome217N
F034176Metagenome / Metatranscriptome175Y
F041019Metagenome / Metatranscriptome160Y
F048089Metagenome / Metatranscriptome148Y
F054849Metagenome139N
F058128Metagenome135Y
F103236Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209597_1000008103F041019AGGAMLDGVKQATTALKTAQSAGKELGAVVSSQQADMEATVQREHESRIKSKLAEQHRKSTLEYRALEKFEIKMKYERDVARLKAETIQKYGKDAWIKVEAEKAVIEKEYKAELSAMDRDRQKQIDVLCWCFVAGTLVTYFFKLYKI
Ga0209597_1000008107F058128AGGAMDAVTWFPIVQPSYANVDGILADVHARKNEERWTEYNKQLTEKIHFRDYLYDVYLKRSHENHVLMEIFKVGTIDLYV
Ga0209597_1000008108F054849GAGMKWRIIFLLSLLGASSVGQSCDDCIGGVVATDTKTCSVSNFYNIAYTLHDPSLRHQQLSIWLTKNGDKCDSKQLVLIWNRLAEWTGAADSAELRGKILYYYSRAEEKERKEKS
Ga0209597_1000008109F015470GGAGMVIKKTPAKKAPVKKAPVKKAPVKKAANSPIVIDVSSTTKSASSMLDKAIDLIKWVDSPFKLFEVILLASVFFFGYFAWDSRTVILNAITQSSKITNLKEVNHLIPVAVSLQKDLEAVSVVVHKASLVVNTRVTMLAFGPRGRDNTLDGLVSSLFSKDPARNAAIIGMLNGEVICDKLEVTGKTSEWEVKQGATFICRGGIPPEIGDFDGYVSVGFKTEPTELSVVKTRINLATSEMSQ
Ga0209597_100000811F001008N/AMSKAKHKPHQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDSNPDGYWLHPEDVGLNIQTIAALDLVISHFVTTEDDIK
Ga0209597_1000008110F021767AGGAGMELEQIKEKMSAGEAKGALIEKVTFAVLPIMFACVVYLMNALSAVHTQLTILEGKMQLVVTSDNKQAPNMGAELVREKLRQDFMQANTEALSRSGANKAVLDTLVWRVQELEKFKEKQSNNGGKK
Ga0209597_1000008145F048089AGGMLKPNKTFKLSKTTKRMLCSITNTEQRNQYKRMMIDAELCAAIVPKSIKSDRGAPRGNGPTGYQTNDTGTASTSTA
Ga0209597_1000008149F018911N/AMIDYITTFFAIFLLDIVYTYYLRCVQYNQVLKASGWSVACYVLGSIAVINYTTNHWLIIPAMAGAFCGTFVGMKIKKKQFGV
Ga0209597_100000816F034176AGGTGGMRHNYAKQRYSDQDLEYFISKFECRVEDSREYNQYVRPAPYYRDVCSSDDWRMETKITPMKAIHLTSDNLARLVAEQEHMQHLSKDAEYGKRAWDHERKDQIVRNANPAVEKAYQKYVMLLELARK
Ga0209597_100000819F011276AGGMIKGLQGSQGLVVSGGNTALPYVNQNPINPIQGMLRIWGTDMQVFDGANWMNLSTSYATVSLDQDTQDLLQWARAQRTMAMNRLTLAQNNPALMKALEAVKRAEDNFELLSKFVEYDLEAELREIAP
Ga0209597_10000082F018911N/AMIDYATTFFAIFLLDVVYTYYLRCVADDNVLGASFWSVACYILGSIAVINYTTNHWLMIPAIAGAFVGTFVGMKIKKNTVS
Ga0209597_1000008203F009749AGGCGGMTYSWILIIAMYSPAGDFMGKNTVGFNSQKECEAVKVQLANLDHPMKVSHKGLCVTRDHWEGKKKMPGVHLD
Ga0209597_100000827F103236AGGAMIHASFGLSNPWGTPFDNLWNRSGRLTTNKSWELELLKGRQLIGFEFGYTMRQSHAGLSLELALLGYSIAFQIYDNRHWDHILNAYTQTNS
Ga0209597_100000849F006506AGCAGGMKKLLAILALVSLTGCASIMEYIPSGWDANQARVITDIQQQARHFDCKAELKPQVDKLARDVEWFDIYSQTKPTRDINKLTGAIKDTVKELQERVAKGSVSPLYCDLKKKIIQQQADILAKSVQGRF
Ga0209597_100000850F010472GGAGMSALAELMNSGNTWAAERARYALQVHEAVGAGQLSASEAREILQDLISTDKLEEAAADQQARAALVFGVTQLISLY
Ga0209597_100000855F019831N/AVTVQRRTHLKQTQSLLPQQNKFDLDGSDLIIDDEVTFGRNRRSEQFGKVVQSDELSDYVKFRLWLARQLAMRAYEKAHA
Ga0209597_100000860F009605AGGAMKTIINTIWSWLEAFGQARCAASLARQGRIAEAKAVYGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.