Scaffold Ga0209085_1009596

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1009596
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4887
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F035668	Metagenome / Metatranscriptome	171	Y
F059760	Metagenome / Metatranscriptome	133	N
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100959610	F059760	AGGAG	MSQPETHDAISRAIQESRDNAIEAVLSIIDSYKRLQMPLDPKDSYDLGARDAVDTLVIHLTKFAEGLKAGRK
Ga0209085_100959613	F077016	AGG	MPTNSAETVREFYRRQGEERERARLINLLKEQNVIRNCGVTGKLVFVNCNTLEVLYLKEIADV
Ga0209085_100959616	F102815	AGGA	MRSPEELFLEAITAYRAWINCGKDFLNHADLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLELVK
Ga0209085_10095962	F006985	N/A	MIREICSCGAEFETDDREAIELVKAWRRTHKHSDKPLKPADRDSSTLSNTDIALGFQAIYDPLDDDE
Ga0209085_10095969	F035668	AGG	MSCSNCQGNCACRVNSINIFSKDYKAGKSEGQREEHTRTSDALIELERKEIISNAQLQAILDLILEKLTDQVDIL