NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1009447

Scaffold Ga0209085_1009447


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1009447 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4931
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F098923Metagenome103N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100944710F057984AGGAMDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFNKAIKRFIETKGKKCTKKSSSKKRSRR
Ga0209085_100944714F098923N/AMYYEEIDRRHVKALENILAEGKCEPGRLIGEDAGHLAYIMNQMFYDKFHGHGWELDLLTGRFVRTTGE
Ga0209085_10094473F039994GGAMDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVARALFAWMQLKKGLPRL
Ga0209085_10094475F039993N/AMKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSNLDDKGVIWKDVK
Ga0209085_10094477F102824GGAMTSVRVQREDEKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGKAQDAADLWNAYALWCKERSGKRKRR
Ga0209085_10094478F091592GGAMISAQFTRGDQDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKSQIGKLSDCNCYRDIKEVRSLVRDVKNGTVLFWCKVAGVRIDQSTLNRVIKRGVGNVN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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