Scaffold Ga0209085_1007414

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1007414
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5625
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004978	Metagenome / Metatranscriptome	416	Y
F005705	Metagenome / Metatranscriptome	392	Y
F044488	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100741416	F005705	AGGAG	MKIVVKVPKQVRAHIVLFCKDTPFKQKVVQSKVKYTRQPKHRGKQND
Ga0209085_100741421	F004978	AGGAG	MITADTLEALTSYSPQFLTRAAQNAGYKGPEFSSCKFLGITNGGQFCYTAVFHVKGGTDSTKIFLTYDHAEDRVIADYHLTELM
Ga0209085_10074148	F044488	AGG	MRYGVSYSTDYLNGCVVIRDFKSVPIGRVLAIIPRDNRHEAEQEAQRISDLLNKDEVKKS